Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,580,806 – 8,580,899 |
Length | 93 |
Max. P | 0.876869 |
Location | 8,580,806 – 8,580,899 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 73.28 |
Mean single sequence MFE | -13.43 |
Consensus MFE | -8.33 |
Energy contribution | -8.33 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.62 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8580806 93 - 27905053 GCAUUCAGUGCUGCCAACUUGGCUAUACUUUAGCUAAAUAAAAAUUAUUCUCCACAUAAUACAAUAUAGUAAAAAGCGUACACAUGGCUUUCC ((((...)))).((((..(((((((.....)))))))......................(((......))).............))))..... ( -14.80) >DroSec_CAF1 8371 73 - 1 GCAUUCAGUGCUGUCAACUUGGCUAUAAUUUAGCUAAAGUAAAAUUACUCUUCACAUAAUACAUCAUAG-----------------GCUU--- ((((...)))).(((...(((((((.....)))))))((((....))))...................)-----------------))..--- ( -11.30) >DroSim_CAF1 20062 71 - 1 GCAUUCAGUGCUGCCAACUUGGCUAUAAUUUAGCUAA-GUCAAA----UCUCCACAUAAUACAUCAUAG-----------------GCUAUUC ((((...)))).(((.(((((((((.....)))))))-))....----........((........)))-----------------))..... ( -14.20) >consensus GCAUUCAGUGCUGCCAACUUGGCUAUAAUUUAGCUAAAGUAAAAUUA_UCUCCACAUAAUACAUCAUAG_________________GCUUU_C ((((...)))).......(((((((.....)))))))........................................................ ( -8.33 = -8.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:54 2006