Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,578,247 – 8,578,365 |
Length | 118 |
Max. P | 0.514327 |
Location | 8,578,247 – 8,578,365 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.36 |
Mean single sequence MFE | -37.98 |
Consensus MFE | -31.17 |
Energy contribution | -30.75 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.22 |
Mean z-score | -1.70 |
Structure conservation index | 0.82 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8578247 118 + 27905053 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGGCGAACCGUCGGCGAUGGUGACACCUUUAACGGGGAACCAAUUUGUUGUUGGCGGUGUUAGAGGCGAGUAUCUG--AAAGGAAAGAGGUG ((.((((((((.........)))))))).))...((((((...))))))..(((((((...((....)).((((((..(((((...)))))..)))))).(((.--...))).))))))) ( -34.50) >DroVir_CAF1 7124 118 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAGCCGUCGGCAAUGGUGACACCUUUGACGGGAAACCAAUUUGUUGUCGGCGGCGUUAGCGGCGAGUAUCUG--CAAAAACAUAGAAC .....(((((((((......((((...((.....(((((((((((((....).........((....)).....))))))))))))....)).)))).))))))--)))........... ( -45.20) >DroGri_CAF1 6052 118 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAGCCUUCGGCAAUGGUGACACCUUUGACGGGAAACCAAUUUGUUGUCGGCGGCGUUAGCGGCGAAUAUCUG--CAAAUAUAUACACA .....(((((((((..(((.(((((((((.....(((..((((((((....))........((....))...))))))..))).))))).))))))).))))))--)))........... ( -37.60) >DroWil_CAF1 29200 118 + 1 CCACAUUGCAGAUGAAUUGAUUGCAAUGCGACGAACCAUCGGCUAUGGUGACACCUUUAACGGGAAACCAAUUUGUUGUUGGUGGUGUGACUGGUGAAUAUCUA--CAAAGAAAGAGAUG ((((((.((.((((..(((.((((...)))))))..)))).)).)))((.(((((.(((((((.(((....))).))))))).))))).)))))....(((((.--(.......)))))) ( -30.00) >DroMoj_CAF1 26868 118 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAGCCGUCGGCUAUGGUGACACCUUUGACGGGAAACCAAUUUGUUGUUGGCGGCGUUAGCGGCGAGUAUCUG--CAAAAGCAUAGAAA .....(((((((((......((((...((.....(((((((((..((....))........((....))........)))))))))....)).)))).))))))--)))........... ( -40.30) >DroAna_CAF1 5526 120 + 1 CCACGUUGCAGAUGAAUUGAUUGCAAUGCGGCGAACCGUUGGCAAUGGUGACACCUUUAACGGGGAACCAAUUUGUUGUCGGCGGAGUUAGAGGCGAGUAUCUGCAAAAGGAGAGAGACA ((...(((((((((..((((((((...((((....))))..)))))(....).((((((((((....))..(((((.....)))))))))))))))).)))))))))..))......... ( -40.30) >consensus CCACGUUGCAGAUGAAUUGAUUGCAAUGCGACGAACCGUCGGCAAUGGUGACACCUUUAACGGGAAACCAAUUUGUUGUCGGCGGCGUUAGCGGCGAGUAUCUG__CAAAGAAAGAGAAA ((.(((((((..((.........)).))))))).((((((((((((((.....))......((....)).....))))))))))))......)).......................... (-31.17 = -30.75 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:52 2006