Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,574,138 – 8,574,233 |
Length | 95 |
Max. P | 0.819442 |
Location | 8,574,138 – 8,574,233 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -14.40 |
Consensus MFE | -12.44 |
Energy contribution | -12.44 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.86 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8574138 95 + 27905053 GCAAAAAUGAAAAUUCAACGAAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGUAUAGCCAGUAAAGCAC ............................((..........(((......))).....(((((((((((......))).)))))))).....)).. ( -15.70) >DroSec_CAF1 1812 92 + 1 GCAAAAAUGAAAAUUCAACGAAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCCAGUAAAGCAC ((.....(((....)))..................(((.(((((.((((.(((....))).....)))).))))).)))---.........)).. ( -14.10) >DroSim_CAF1 13570 92 + 1 GCAAAAAUGAAAAUUCAACGAAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCCAGUAAAGCAC ((.....(((....)))..................(((.(((((.((((.(((....))).....)))).))))).)))---.........)).. ( -14.10) >DroEre_CAF1 13113 92 + 1 UCAAAAAUGAAAAUUCAACGAAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCUAGUAAAGCAC .......................................(((((.((((.(((....))).....)))).)))))..((---(((.....))))) ( -15.00) >DroYak_CAF1 3605 92 + 1 UCAAAAAUGAAAAUUCAACGAAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCCAGUAAAGCAC .......................................(((((.((((.(((....))).....)))).)))))..((---((.......)))) ( -13.10) >consensus GCAAAAAUGAAAAUUCAACGAAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU___GCCAGUAAAGCAC ............................((.....(((.(((((.((((.(((....))).....)))).))))).)))...))........... (-12.44 = -12.44 + 0.00)
Location | 8,574,138 – 8,574,233 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -17.34 |
Consensus MFE | -15.10 |
Energy contribution | -14.94 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.34 |
Structure conservation index | 0.87 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8574138 95 - 27905053 GUGCUUUACUGGCUAUACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUUCGUUGAAUUUUCAUUUUUGC .......((.(((...(((.(((((........(((((....)))))....))))).))).....)))..))....................... ( -15.50) >DroSec_CAF1 1812 92 - 1 GUGCUUUACUGGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUUCGUUGAAUUUUCAUUUUUGC (((((.....)))---))..(((((........(((((....)))))....)))))..(..((((.(..((....))..)))))..)........ ( -17.80) >DroSim_CAF1 13570 92 - 1 GUGCUUUACUGGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUUCGUUGAAUUUUCAUUUUUGC (((((.....)))---))..(((((........(((((....)))))....)))))..(..((((.(..((....))..)))))..)........ ( -17.80) >DroEre_CAF1 13113 92 - 1 GUGCUUUACUAGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUUCGUUGAAUUUUCAUUUUUGA (((((.....)))---))..(((((........(((((....)))))....)))))..(..((((.(..((....))..)))))..)........ ( -17.80) >DroYak_CAF1 3605 92 - 1 GUGCUUUACUGGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUUCGUUGAAUUUUCAUUUUUGA (((((.....)))---))..(((((........(((((....)))))....)))))..(..((((.(..((....))..)))))..)........ ( -17.80) >consensus GUGCUUUACUGGC___ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUUCGUUGAAUUUUCAUUUUUGC .......((.(((...(((.(((((........(((((....)))))....))))).))).....)))..))....................... (-15.10 = -14.94 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:51 2006