Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,570,554 – 8,570,648 |
Length | 94 |
Max. P | 0.920786 |
Location | 8,570,554 – 8,570,648 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 57.01 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -13.11 |
Energy contribution | -12.57 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.42 |
Mean z-score | -1.50 |
Structure conservation index | 0.51 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8570554 94 - 27905053 CAAACCCAACAAAUUGC-CAAAGAGGCGCCGCCGGUGCUCGGAGGGAUU------------UUUUGAGUCCAGGACUAGGCGCCAAAGCAAAA-GACCCACUCCUGGA------ .............((((-......((((((.((((.((((((((.....------------)))))))))).))....))))))...))))..-...(((....))).------ ( -27.30) >DroGri_CAF1 37752 96 - 1 CAAACACAACAAAUUACCCAAAGAGGCGCCGUCGGCAUUCCGUGUGGCA------------UU-----UGUG-GCACAGGCGCCAACAAGCACACACACACACACAGCCCAACA ......................(.((((((...))).....(((((((.------------.(-----((((-((......))).)))))).))))).........)))).... ( -24.90) >DroAna_CAF1 26076 102 - 1 CAAACACAACAAAUUGC-CAAAGAGGCGCCGGCGGUGCCUGCUAAGGUUUUUCUUUUCGUUUUUUUUUUCCG---CGAGGCGCCAAAGCAAAA--CCUUACUCAAAGA------ .............((((-......((((((.((((.((((....)))).....................)))---)..))))))...))))..--.............------ ( -25.25) >consensus CAAACACAACAAAUUGC_CAAAGAGGCGCCGCCGGUGCUCGGUGAGGUU____________UUUU___UCCG_G_CCAGGCGCCAAAGCAAAA__ACACACUCAAAGA______ ........................((((((.((((...))))..........................((......)))))))).............................. (-13.11 = -12.57 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:49 2006