Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,562,439 – 8,562,545 |
Length | 106 |
Max. P | 0.896044 |
Location | 8,562,439 – 8,562,545 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.89 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -14.62 |
Energy contribution | -15.18 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.90 |
Structure conservation index | 0.54 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8562439 106 + 27905053 GU--------UCAGUGGACGAUAAACGGACGCGAUUAAAUGAGCAAAUCGUUUAAUUAUAAGUCCACUUAAUGCCCAGCGUAAAGCCAAAGGCUUUAUGGGCGACAUAUC--CUGG---- ((--------(.(((((((......((....))(((((((((.....))))))))).....))))))).)))(((((...(((((((...))))))))))))........--....---- ( -33.80) >DroVir_CAF1 38077 104 + 1 ----------------GACGAUAAACACACCCGAUUAAAUGGGCAGAGCGUUUAAUUAUAAGUUCACUUAAUGUCAAGCAUAAAGCCAAAGGCUUUACGGCCAACAACUCUCGUUAAAAC ----------------(((((........((((......))))..(((..........((((....)))).(((...((.(((((((...)))))))..))..))).))))))))..... ( -19.90) >DroGri_CAF1 33702 120 + 1 GUUGCCGUUCUCAUUGGUCGAUAAGCAUAUCGGAUUAAAUGGGAAAAUCGUUUAAUUAUAAGUUCAUUUAGUGCCGAGGAUAAAGCCAAAGGCUUUAUGACCACAAACUCUCGUUAAAAC .(((.((.......(((((..........((((((((((((((...................)))))))))).))))..((((((((...)))))))))))))........)).)))... ( -25.97) >DroAna_CAF1 23657 107 + 1 GU--------CCAUCGAACGAUAAACAGACGCGAUUAAAUGAGCAAAUCGUUUAAUUAUAAGUCCACUUAAUGCCAAGCGUAAAGCCAAAGGCUUUAUGAGCGCUCUUUU--GUGAA--- ..--------..........(((((.((((((((((((((((.....)))))))))).((((....))))........(((((((((...))))))))).))).))))))--))...--- ( -26.60) >DroPer_CAF1 39648 106 + 1 -U--------GCAGUGGCCGAUAAACAGGCGCGAUUAAAUGAGAAAAUCGUUUAAUUAUAAUUCCACUUAAUGCCAGGCGUAAAGCCGAAGGCUUUAUAGACGACAUUUG--CUGCA--- -.--------(((((.(((........)))..((((((((((.....)))))))))).........(((((.(((.(((.....)))...))).))).)).........)--)))).--- ( -30.10) >consensus GU________UCAGUGGACGAUAAACAGACGCGAUUAAAUGAGCAAAUCGUUUAAUUAUAAGUCCACUUAAUGCCAAGCGUAAAGCCAAAGGCUUUAUGGCCGACAUCUC__GUGAA___ ................................((((((((((.....)))))))))).....................(((((((((...)))))))))..................... (-14.62 = -15.18 + 0.56)
Location | 8,562,439 – 8,562,545 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.89 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -8.91 |
Energy contribution | -9.39 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.20 |
Mean z-score | -1.79 |
Structure conservation index | 0.33 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8562439 106 - 27905053 ----CCAG--GAUAUGUCGCCCAUAAAGCCUUUGGCUUUACGCUGGGCAUUAAGUGGACUUAUAAUUAAACGAUUUGCUCAUUUAAUCGCGUCCGUUUAUCGUCCACUGA--------AC ----....--........((((((((((((...)))))))...)))))....(((((((.......((((((...(((..........)))..))))))..)))))))..--------.. ( -31.10) >DroVir_CAF1 38077 104 - 1 GUUUUAACGAGAGUUGUUGGCCGUAAAGCCUUUGGCUUUAUGCUUGACAUUAAGUGAACUUAUAAUUAAACGCUCUGCCCAUUUAAUCGGGUGUGUUUAUCGUC---------------- ......((((....(((..(.(((((((((...))))))))).)..))).((((....))))....(((((((...((((........))))))))))))))).---------------- ( -31.10) >DroGri_CAF1 33702 120 - 1 GUUUUAACGAGAGUUUGUGGUCAUAAAGCCUUUGGCUUUAUCCUCGGCACUAAAUGAACUUAUAAUUAAACGAUUUUCCCAUUUAAUCCGAUAUGCUUAUCGACCAAUGAGAACGGCAAC ((((((((....)))..(((((((((((((...))))))))..((((...((((((.......................))))))..))))..........)))))...)))))...... ( -25.00) >DroAna_CAF1 23657 107 - 1 ---UUCAC--AAAAGAGCGCUCAUAAAGCCUUUGGCUUUACGCUUGGCAUUAAGUGGACUUAUAAUUAAACGAUUUGCUCAUUUAAUCGCGUCUGUUUAUCGUUCGAUGG--------AC ---.....--....(((((....(((((((...)))))))))))).((((((((((..(....((((....)))).)..)))))))).))....(((((((....)))))--------)) ( -25.30) >DroPer_CAF1 39648 106 - 1 ---UGCAG--CAAAUGUCGUCUAUAAAGCCUUCGGCUUUACGCCUGGCAUUAAGUGGAAUUAUAAUUAAACGAUUUUCUCAUUUAAUCGCGCCUGUUUAUCGGCCACUGC--------A- ---....(--(.(((((((....(((((((...)))))))....))))))).((((..............(((((.........))))).(((........)))))))))--------.- ( -24.50) >consensus ___UUCAC__GAAAUGUCGCCCAUAAAGCCUUUGGCUUUACGCUUGGCAUUAAGUGGACUUAUAAUUAAACGAUUUGCUCAUUUAAUCGCGUCUGUUUAUCGUCCAAUGA________AC ..................((...(((((((...))))))).))...((((((((((..(.................)..)))))))).)).............................. ( -8.91 = -9.39 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:49 2006