Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,242,958 – 1,243,069 |
Length | 111 |
Max. P | 0.895338 |
Location | 1,242,958 – 1,243,069 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 74.20 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -11.88 |
Energy contribution | -15.00 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.24 |
Mean z-score | -2.33 |
Structure conservation index | 0.38 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1242958 111 + 27905053 AGUUGGUGAGCUGGUAAGGCUGCUUGCAACUCGCAGAAUCCCUGGUCGGAAAUUUUCAUGAGAAAUCAUGGCAGAAAUAGAAAUUCUA-AUUGCUGCGAGGAAUUUCAAUU---C ((((((..(((.((.....)))))..)..(((((((..(((......))).....((((((....))))))......(((.....)))-....)))))))......)))))---. ( -30.60) >DroSec_CAF1 16756 111 + 1 AGAUGGUGAGCUGGUAAGGCUGCUUGCCACUCGCAGAAUCCCUGGUCUGAAAUUUUCAUGAGAAAUCAUGGCAGAAAUAGAAAUUCUA-AUUGCUGCGAGGAAUUUCAAUU---C .(((.(((((.(((((((....))))))))))))...))).......((((((((((((((....)))))((((((.(((.....)))-.)).))))..)))))))))...---. ( -37.20) >DroSim_CAF1 17062 111 + 1 AGUUGGUGAGCUGGUAAGGCUGCUUGCCACUCGCAGAAUCCCUGGUCGGAAAUUUUCAUGAGAAAUCAUGGCAGAAAUAGAAAUUCUA-AUUGCUGCGAGGAAUUUCAAUU---C .....(((((.(((((((....))))))))))))..............(((((((((((((....)))))((((((.(((.....)))-.)).))))..))))))))....---. ( -34.80) >DroEre_CAF1 17153 85 + 1 AGUUGGUGAGCUGGCAAGGCUGCUUGCCACUCGCAGAAUCUCUUGUCGAA--------------------------AUAGAAAUUCUA-AUUGACAUGAGGAAUGCGAAUU---C ...(((..(((.(((...))))))..))).(((((...((((.((((((.--------------------------.(((.....)))-.)))))).))))..)))))...---. ( -30.80) >DroYak_CAF1 23251 115 + 1 AGUUGGUGAGCUGAUAAGGCUGCUUGCCACUCGCAGAAUCCCUUGUCGGAAAUUUAUAGGGGAAAUCACGGCAGAAAUAGAAAUUCCUGCGAGGAAUUACAAAUGGAAAUUGGUU ...(((..(((..........)))..)))(((((((..((((((((.........))))))))..((......))...........))))))).....((.(((....))).)). ( -31.20) >DroAna_CAF1 17738 100 + 1 ACUUGGU---CUGGAUAAGCUUCUUGCUAAAUGCAAAAUUCCCUGUUGGAAAUU-UCAUGAGAAAUCAUGACAG------AAAUUCUA-AUUGCUGC-AGGAAUUUCAAUU---C .......---.((((.....(((((((.....((((..((((.....))))...-((((((....))))))...------........-.)))).))-))))).))))...---. ( -22.10) >consensus AGUUGGUGAGCUGGUAAGGCUGCUUGCCACUCGCAGAAUCCCUGGUCGGAAAUUUUCAUGAGAAAUCAUGGCAGAAAUAGAAAUUCUA_AUUGCUGCGAGGAAUUUCAAUU___C .....(((((.(((((((....))))))))))))(((((.((.....))......((((((....))))))...........)))))............................ (-11.88 = -15.00 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:23 2006