Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,540,329 – 8,540,449 |
Length | 120 |
Max. P | 0.500000 |
Location | 8,540,329 – 8,540,449 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -44.13 |
Consensus MFE | -30.76 |
Energy contribution | -30.93 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.29 |
Mean z-score | -1.43 |
Structure conservation index | 0.70 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8540329 120 - 27905053 CUGGGCGCCAACGGAAUGGGUAUACCCGUGGGCAAACUGUCCCUGUAUACGGCCUUGGCGGGCAUUAAGCCAUCGCAGUGCCUGCCCAUCACCUUGGAUGUGGGCACCAAUACCGAAUCC .((((((((((.((.(((((....)))))((((.....))))(((....))))))))))(((((((..((....)))))))))))))).......((((.(((.........))).)))) ( -44.60) >DroVir_CAF1 4389 120 - 1 CUGGGCGCCAACGGCAUGGGCAUACCCGUGGGCAAGCUCUCGCUAUAUACGGCUCUGGCUGGCAUUAAGCCGCAUCAGUGCCUGCCCAUCACCUUGGACGUGGGCACCAACACACAGUCC ..(((((((((.((...(((....)))((((((((((....)))......(((.((((.((((.....))))..)))).))))))))))..)))))).)(((........)))...)))) ( -44.90) >DroGri_CAF1 6800 120 - 1 CUAGGCGCCAAUGGCAUGGGCAUACCUGUGGGAAAACUAUCGCUAUACACGGCUCUGGCCGGCAUCAAGCCGCAUCAGUGUCUGCCCAUCACAUUGGAUGUGGGCACGAACACUCAGUCC ...(((.((((((..(((((((.((((((((.....)))..((.......(((....)))(((.....)))))..))).)).)))))))..))))))..(((........)))...))). ( -41.90) >DroWil_CAF1 2317 120 - 1 CUCGGUGCCAAUGGCAUGGGCAUCCCUGUCGGCAAGCUGUCGCUGUACACAGCUCUGGCCGGCAUUAAGCCAAGCCAGUGUCUGCCCAUCACCCUGGAUGUUGGUACCAACACUCAAUCC ...((((((((.((((.(((...)))))))((((..(....((((....)))).(((((.(((.....)))..))))).)..))))((((......))))))))))))............ ( -47.10) >DroMoj_CAF1 3955 120 - 1 CUCGGCGUCAAUGGCAUGGGCAUACCCGUGGGCAAGCUGUCGCUGUACACGGCACUCGCUGGCAUCAAGCCCAACCAGUGCCUGCCCAUCACCCUGGACGUGGGCACCAACACCGAGUCC (((((((((...((.(((((((.....(((..((.((....))))..)))((((((.(..(((.....)))...).)))))))))))))...))..))))(((...)))...)))))... ( -47.00) >DroAna_CAF1 1891 120 - 1 UUGGGAGCCAACGGCAUGGGUAUCCCCGUGGGCAAGCUCUCUCUGUACACCGCUCUGGCCGGUAUCAAGCCCUCCCAGUGCCUGCCCAUCACCCUGGACGUCGGCACCAAUACCGAAUCU ((((..(((.(((.((.((((......(((((((.((.......)).....((.((((..(((.....)))...)))).)).))))))).))))))..))).))).)))).......... ( -39.30) >consensus CUGGGCGCCAACGGCAUGGGCAUACCCGUGGGCAAGCUGUCGCUGUACACGGCUCUGGCCGGCAUCAAGCCAAACCAGUGCCUGCCCAUCACCCUGGACGUGGGCACCAACACCCAAUCC ...((.(((.(((....(((....)))((((((((((....)))......(((.((((..(((.....)))...)))).)))))))))).........))).))).))............ (-30.76 = -30.93 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:45 2006