Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,512,232 – 8,512,322 |
Length | 90 |
Max. P | 0.850236 |
Location | 8,512,232 – 8,512,322 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 75.61 |
Mean single sequence MFE | -26.72 |
Consensus MFE | -15.33 |
Energy contribution | -17.23 |
Covariance contribution | 1.90 |
Combinations/Pair | 1.19 |
Mean z-score | -1.78 |
Structure conservation index | 0.57 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8512232 90 - 27905053 AGCGAUCCUCCUCCGACCGA---ACGGCAGCCAGAUGCACUCAUCUAGGGCUAAGGCUAGAGCUAAGCCAAGACUGGCUGCCAGUUCAGUUCC ..............(((.((---((((((((((((((....)))))..((((..(((....))).))))......))))))).)))).))).. ( -33.10) >DroSec_CAF1 3222 90 - 1 AGCGAUCCUCCUCCGAACGA---ACGGCAGCCAGAUGCACUCAUCUAGGGCUAAGGCUAGAGCUAAGCCAAGACUGGCUGCCAGUUCAGUUCC ..............((((((---((((((((((((((....)))))..((((..(((....))).))))......))))))).)))).)))). ( -35.30) >DroSim_CAF1 3194 90 - 1 AGCGAUCCUCCUCCGACCGA---ACGGCAGCCAGAUGCACUCAUCUAGGGCUAAGGCUAGAGCUAAGCCAAGACUGGCUGCCAGUUCAGUUCC ..............(((.((---((((((((((((((....)))))..((((..(((....))).))))......))))))).)))).))).. ( -33.10) >DroEre_CAF1 3283 86 - 1 AGCGAUCCUCCUCC----AA---ACGGCAGCUAGAUGCAUUCAUCUGGGGCUAAGGCUAGAGCUAAGCUAAGACUGGCUGCCAGUUCAGUUCC ..............----..---..(((((((((.........(((..((((..(((....))).)))).))))))))))))........... ( -24.10) >DroYak_CAF1 3304 74 - 1 AGCGAUCCUCCGCC----AA---ACGGCAGCUAGAUGCAUUUAUC------------UAGAGCUAAGCUAAGACUGGCUGCCAGUUCAGUUCC .(((......))).----..---..(((((((((.........((------------(..(((...))).))))))))))))........... ( -20.30) >DroAna_CAF1 3187 73 - 1 AGCGAUCCUCCUCCGACG-AGUUAAGGAAAA--------AAAAAAUAAAGCUAAAGCCAGAGCU------AGAGCGGCAGCUA-----GUUCC (((..((((.(((....)-))...))))...--------..........(((..(((....)))------..)))....))).-----..... ( -14.40) >consensus AGCGAUCCUCCUCCGACCGA___ACGGCAGCCAGAUGCACUCAUCUAGGGCUAAGGCUAGAGCUAAGCCAAGACUGGCUGCCAGUUCAGUUCC .........................(((((((((..((.....(((((........))))).....)).....)))))))))........... (-15.33 = -17.23 + 1.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:37 2006