Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,494,641 – 8,494,743 |
Length | 102 |
Max. P | 0.660224 |
Location | 8,494,641 – 8,494,743 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -27.97 |
Consensus MFE | -23.73 |
Energy contribution | -23.15 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.22 |
Mean z-score | -1.41 |
Structure conservation index | 0.85 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8494641 102 + 27905053 CUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGUU------------ACGG----AU-- ((((((((((((..(((((((.....)))))))))).))))....(((((((.(.....).)))))))(((((....))).)).))))).......------------....----..-- ( -32.90) >DroGri_CAF1 10799 108 + 1 CUGGACGGCGAUCAGCUCGAAAACAAUUCGAGUGUCAGUCGAAAUUCGAUAUACAAACUUAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGUG------------CGAGUCGAAAGU .....(((((((..(((((((.....)))))))))).))))...((((((.(((..((((..(((((.((........)))))))..))))..)))------------...))))))... ( -29.20) >DroSim_CAF1 79 102 + 1 CUGGACAGCGACCAGCUCGAAAAUAAUUCCAGUGUCCCCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGUU------------ACAG----AU-- (((....(((....(((.(((.....))).)))......)))((((((((((.(.....).)))))(((((((....))).))))......)))))------------.)))----..-- ( -21.90) >DroWil_CAF1 374 100 + 1 UUGGAUGGCGAUCAGCUUGAAAACAAUUCAAGUGUCAGUCGAAAUUCGAUAUACAAACUCAAGAUCGAUCUGAUGUUUGAUGAUUCCAGGUGAGUU------------CUAA-------- ((((((..((((..(((((((.....)))))))....))))..))))))......((((((.((((.(((........))))))).....))))))------------....-------- ( -23.80) >DroMoj_CAF1 9844 104 + 1 CUGGACGGCGAUCAGCUCGAGAACAACUCGAGUGUCAGUCGAAACUCGAUAUACAAACUCAAAAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGUG------------CCCA----AGGC ......((((((..(((((((.....)))))))))).((((.....))))......(((((.(((((.((........))))))).....))))))------------))..----.... ( -28.10) >DroAna_CAF1 3040 114 + 1 CUGGACGGCGAUCAGCUCGAAAAUAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUCAAGAUAGAUCUUAUGUUUGACGAUUCCAGGUGAGUUUACUUUUACAAUACAG----AU-- ((((((((((((..(((((((.....)))))))))).))))............(((((..((((....))))..))))).....)))))(((((......))))).......----..-- ( -31.90) >consensus CUGGACGGCGAUCAGCUCGAAAACAAUUCGAGUGUCAGCCGAAACUCGAUAUACAAACUCAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGUU____________ACAG____AU__ ((((((((((((..(((((((.....)))))))))).))))............(((((...(((....)))...))))).....)))))............................... (-23.73 = -23.15 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:33 2006