Locus 3200

Sequence ID 3R_DroMel_CAF1
Location 8,494,287 – 8,494,382
Length 95
Max. P 0.545588
window5183

overview

Window 3

Location 8,494,287 – 8,494,382
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 95.44
Mean single sequence MFE -30.27
Consensus MFE -28.11
Energy contribution -27.67
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.93
SVM decision value 0.02
SVM RNA-class probability 0.545588
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8494287 95 - 27905053
CGGCGGAGGAGCUAGCAAUUUGUGAGCAAUUAGCGGUGAAUGCAAUCCGUUUAGGCGCAAUGAACGUUAAUUCCCAACAUGUUAGCGAAUCGCAC
..((((....(((((((...(((..(.((((((((.....(((...((.....)).))).....)))))))).)..))))))))))...)))).. ( -27.10)
>DroSec_CAF1 29900 95 - 1
CGGCGGCGGAGCUAGCAAUUUGUGAGCAAUUAGCGGUGAAUGCAAUCCGUUUAGGCGCAAUGAACGUUAAUUCCCAACAUGUUAGCGAAUCGCAC
.....((((.(((((((...(((..(.((((((((.....(((...((.....)).))).....)))))))).)..))))))))))...)))).. ( -27.10)
>DroYak_CAF1 30312 95 - 1
CGGCGGUGGAGCUAGCAAUUUGUGAGCAAUUAGCGGUGAAUGCAAUCCGUUUAGGCGCAUUGAACGCUAAUUUCCAACGUGUUAGCGAAUCGCGC
..(((((...(((((((..(((.((..((((((((.(.(((((...((.....)).))))).).)))))))))))))..)))))))..))))).. ( -36.60)
>consensus
CGGCGGAGGAGCUAGCAAUUUGUGAGCAAUUAGCGGUGAAUGCAAUCCGUUUAGGCGCAAUGAACGUUAAUUCCCAACAUGUUAGCGAAUCGCAC
..((((....(((((((...(((..(.((((((((.....(((...((.....)).))).....)))))))).)..))))))))))...)))).. (-28.11 = -27.67 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:32 2006