| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 271,883 – 271,995 |
| Length | 112 |
| Max. P | 0.769867 |
| Location | 271,883 – 271,995 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.65 |
| Mean single sequence MFE | -30.15 |
| Consensus MFE | -25.48 |
| Energy contribution | -25.15 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.769867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 271883 112 + 27905053 UUACUCUCCGGGAUGUGGGACUAUCUGUGUAGUCCACCGGCUGGCACCGGAAGCUGUACGAGCCCCACCAGCCGCCCAUCAAGCACUAGAAC-AGAG----ACAUUAGCAGCAAAA--A- ...((((..(((.....(((((((....)))))))..(((((((....((..(((.....))).)).)))))))))).((........))..-))))----...............--.- ( -32.10) >DroVir_CAF1 19678 116 + 1 UUACUCUCCUAGAUGUGGCACUAUCGCUAUAGUCCACAGGCUGACAGCGGAAGCUGUACGAACCCCACCAGCCGCCCAUUAAACACUAAAAACGAAAUC--AGAUUAAUGCCAAAG--AA .........(((.(((((.(((((....))))))))))((((((((((....)))))..(.....)..)))))............)))...........--...............--.. ( -28.30) >DroGri_CAF1 11239 116 + 1 UUACUCUCCUAGAAGUGGGACUAUCGGUAUAGUCCACGGGCUGACAGCGGAAGCUGUACGAACCCCACCAGCCGCCCAUUAAACACUAAAAACAAAAUU--AAAUUAAUUGCAAAG--AA .............(((((((((((....)))))))...((((((((((....)))))..(.....)..)))))..........))))............--...............--.. ( -29.90) >DroWil_CAF1 21379 117 + 1 UUACUCUCCUCGAUGUGGCACUAUCUGUGUAGUCCACCGGCUGGCAGCGGAAGCUGUAUGCGCCCCACCAGCCGCCCAUUAAACACUAAAAU-UAAAUCAAAAGUUAAUUGCAAAU--CA ...........(((((((.(((((....)))))))))(((((((((((....))))...........)))))))..................-...))).................--.. ( -29.30) >DroMoj_CAF1 10139 118 + 1 UUACUCUCCUAGAUGUGGCACUAUCGCUAUAGUCCACUGGCUGACAGCGGAAGCUGUACGAACCCCACCAGCCGCCCAUUAAACACUAAAAACAAAAUC--AGAUUAAUGCCAAAAGAAA ...........(((((((.(((((....))))))))).((((((((((....)))))..(.....)..))))).......................)))--................... ( -27.10) >DroPer_CAF1 8232 113 + 1 UUACUCUCCGGGAUGUGGCACUAUCUGUGUAGUCCACCGGCUGGCAGCGGAAGCUGUACGCGCCCCACCAGCCGCCCAUUAAGCACUAGAAC-AAAG----AAAUCAUUUGCAAAA--GA .........(((..((((.(((((....)))))))))(((((((((((....))))...........)))))))))).....(((...((..-....----...))...)))....--.. ( -34.20) >consensus UUACUCUCCUAGAUGUGGCACUAUCGGUAUAGUCCACCGGCUGACAGCGGAAGCUGUACGAACCCCACCAGCCGCCCAUUAAACACUAAAAA_AAAAUC__AAAUUAAUUGCAAAA__AA ..............((((.(((((....))))))))).((((((((((....)))))..(.....)..)))))............................................... (-25.48 = -25.15 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:52 2006