Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,493,557 – 8,493,655 |
Length | 98 |
Max. P | 0.538021 |
Location | 8,493,557 – 8,493,655 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -24.64 |
Energy contribution | -24.48 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.26 |
Structure conservation index | 0.88 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8493557 98 - 27905053 CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAGAUAAAAGCAAA---- .....(((((((.......))))(((((((((...((((....)))).....))))))))).................))).................---- ( -26.50) >DroSec_CAF1 29181 102 - 1 CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAGCUGAAAGCAAAAGAG .(((....((((.......))))(((((((((...((((....)))).....)))))))))......)))..(((.(..((.....))..).)))....... ( -29.40) >DroSim_CAF1 30694 102 - 1 CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAGCUAAAAGCAAAAGAG .(((....((((.......))))(((((((((...((((....)))).....)))))))))......)))..(((.(((((.....))))).)))....... ( -29.90) >DroEre_CAF1 28215 95 - 1 CCGAAACCGGGCUAAGUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUAGUUGGCUAAAAG-------CUAAAGAG .(((...(((((...)))))...(((((((((...((((....)))).....)))))))))......)))......(((((.....)-------)))).... ( -27.90) >DroYak_CAF1 29598 94 - 1 CCGAAACCGGACUAAGUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGCAGUUGGCUAAAAG-------C-AAAGAG .(((...(((((...)))))...(((((((((...((((....)))).....)))))))))......))).(((.....))).....-------.-...... ( -26.30) >consensus CCGAAGCCGGGCUAAAUCCGUCCGAGUUCGUUGAAUGCCACACGGCGACUAAAACGGGCUCAAAACGUCGAAGUUGUUGGCCAUAAG_U_AAAGCAAAAGAG ........((((.......))))(((((((((...((((....)))).....))))))))).....(((((.....)))))..................... (-24.64 = -24.48 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:31 2006