Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,492,879 – 8,492,976 |
Length | 97 |
Max. P | 0.781231 |
Location | 8,492,879 – 8,492,976 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 98.14 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -26.08 |
Energy contribution | -26.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.96 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781231 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8492879 97 + 27905053 AAUUACCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU ...........((((((.(((..((((.((((.((..((((((............))))))..).).))))))))...)))..)))).))....... ( -25.90) >DroSec_CAF1 28503 97 + 1 AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAGAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU ...........((((((.(((..((((.((((....((..((((((...........))))))..))))))))))...)))..)))).))....... ( -26.80) >DroSim_CAF1 29994 97 + 1 AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAGAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU ...........((((((.(((..((((.((((....((..((((((...........))))))..))))))))))...)))..)))).))....... ( -26.80) >DroEre_CAF1 27546 97 + 1 AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU ...........((((((.(((..((((.((((.((..((((((............))))))..).).))))))))...)))..)))).))....... ( -25.90) >DroYak_CAF1 28911 97 + 1 AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCCACACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU ...........((((((.(((..((((.(((((((..((((((............))))))..).))))))))))...)))..)))).))....... ( -30.00) >consensus AAUUUCCAACUGCGCCCAGGCGAUUUCAGCUCGGCACAAAGUGAAAAAUUAAAUGCAUUUUACGAUGGAGCGAAAGAGGCCGCGGGCAGCUCCAAUU ...........((((((.(((..((((.((((....((..((((((...........))))))..))))))))))...)))..)))).))....... (-26.08 = -26.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:30 2006