Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,488,346 – 8,488,439 |
Length | 93 |
Max. P | 0.773058 |
Location | 8,488,346 – 8,488,439 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 81.79 |
Mean single sequence MFE | -30.41 |
Consensus MFE | -18.02 |
Energy contribution | -19.08 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.18 |
Mean z-score | -2.49 |
Structure conservation index | 0.59 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.773058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8488346 93 + 27905053 GGCUAAUCCACUGCUGCCGCCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCACGCGCAGAGGCCAAAACA-AAACUGGCCACU (((((......(((((......(((....)))..))))).((((((((((((..((((.(....).)))).)))).)))))-))).)))))... ( -32.70) >DroSec_CAF1 24066 93 + 1 GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACGGCACGCAUGCGCAGAGGCCAAAACA-AAACUGGCCACU (((((......(((((.((((........)))).))))).((((((((((((....((........))...)))).)))))-))).)))))... ( -32.70) >DroSim_CAF1 25478 93 + 1 GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCAUGCGCAGAGGCCAAAACA-AAACUGGCCACU (((((......(((((.((((........)))).))))).((((((((((((..((((........)))).)))).)))))-))).)))))... ( -36.00) >DroEre_CAF1 22756 93 + 1 GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACAUCACGCAUGCGCAAGAGCCAAAACA-AAACUGGCCACU (((((......(((((.((((........)))).))))).(((((((((((...(((.....)))(....).))).)))))-))).)))))... ( -27.60) >DroYak_CAF1 24131 93 + 1 GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCAUGCGCAAGAGCCAAAACA-AAACUGGCCACU (((((......(((((.((((........)))).))))).((((((((((((...((((....))))...).))).)))))-))).)))))... ( -29.90) >DroAna_CAF1 32936 73 + 1 GGCUAAUCCACUUCAGUCGC----CGUCAACUGGCCACGCAUCUGGCUGU-----------------UUGUGGCUGGAACAAAAACUGGCCACU (((((......(((((((((----....(((.(((((......)))))))-----------------).)))))))))........)))))... ( -23.54) >consensus GGCUAAUCCACUGCUGCCGUCAGUCGUCAGAUGUCAGCACUUUUGUUUGGCCAACUGCACGCAUGCGCAGAGGCCAAAACA_AAACUGGCCACU (((((......(((((.((((........)))).)))))......((((((.....((......))......))))))........)))))... (-18.02 = -19.08 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:29 2006