Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,483,846 – 8,483,943 |
Length | 97 |
Max. P | 0.563490 |
Location | 8,483,846 – 8,483,943 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 83.68 |
Mean single sequence MFE | -35.45 |
Consensus MFE | -27.34 |
Energy contribution | -27.70 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.60 |
Structure conservation index | 0.77 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8483846 97 + 27905053 G--------AUUGUUUGCAGUCGUGGGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAAUACCGCAAGGGCAAACAUGUGAGUUGUGC .--------..(((((((....((.((((((.((....))..)))))).))((((....(((....)))..))))...((....)))))))))............ ( -32.30) >DroVir_CAF1 31348 105 + 1 AAUAGUUUUGUGCGUUGCCGUUGCCGUUGCCGUUGCCGCAGAGAUGCCCGGCGGCUAUCGUCGCGAGAUUUGCCAGUACCGCAAGGGCAGACAGGUGCGUAAUGG ..........(((((.(((.(((((.((((.((.((((((....)))..)))(((....(((....)))..)))...)).)))).)))))...)))))))).... ( -38.40) >DroSec_CAF1 19499 97 + 1 G--------AUUGUUUGCAGUCGUGAGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUGUGG .--------..(((((((...(....)((((((((...(((.....)))((((((....(((....)))..)))))).)))))))))))))))............ ( -35.80) >DroSim_CAF1 20967 97 + 1 G--------AUUGUUUGCAGUCGUGGGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUGUGG .--------..(((((((....((((......(((((.......)))))((((((....(((....)))..)))))).))))....)))))))............ ( -34.60) >DroEre_CAF1 17894 97 + 1 G--------UUUUUUUGCAGUCGUGGGCUUUGUGGCUGCGGAGAAGCCGAAAGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUUUGG .--------..((((((((((((..(...)..))))))))))))((((....)))).......(((((((..(..((.((....))....))..)..))))))). ( -36.10) >DroYak_CAF1 19441 97 + 1 G--------UUUGUUUGCAGUCGUGGGCUCUGUGGCUGCGGAAAAGCCGAAAGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUUCUG (--------(((((..(((((((..(...)..)))))))((...((((....))))...(((....)))...))....((....))))))))............. ( -35.50) >consensus G________AUUGUUUGCAGUCGUGGGCUUUGUGGCUGCGGAAAAGCCGACUGGCUAUCAUCGCGAGAUUUGCCAGUACCGCAAGGGCAAACAUGUGAGUUGUGG .............((((((((((..(...)..))))))))))..((((....))))....(((((.(.((((((.....(....)))))))).)))))....... (-27.34 = -27.70 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:27 2006