Locus 3194

Sequence ID 3R_DroMel_CAF1
Location 8,481,962 – 8,482,061
Length 99
Max. P 0.747521
window5177

overview

Window 7

Location 8,481,962 – 8,482,061
Length 99
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 83.64
Mean single sequence MFE -27.52
Consensus MFE -18.33
Energy contribution -17.87
Covariance contribution -0.47
Combinations/Pair 1.25
Mean z-score -2.86
Structure conservation index 0.67
SVM decision value 0.47
SVM RNA-class probability 0.747521
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8481962 99 + 27905053
AAAUCGGUGUGUUCCAAAAAG--GAAAACCCAAUUCAA--UGGCAGCCCGCGAAUGGCGGAAGUUAUAAAUUCCUAAGC-GGGCUGAUAUCAUGGCUAUUUAUA
.....((.((.((((.....)--))).)))).....((--(((((((((((..(((((....)))))..........))-)))))(....)...)))))).... ( -29.30)
>DroPse_CAF1 20521 103 + 1
AAAUUGGCAUUUUCCAAAAAAACGAAUUCCAAAUUCGGCACCACAGCUCGUC-GGAACGGAAGUUAUAAAUUCCUAAGCUGGGCUGAUAUCAUGGCUAUUUAUA
...((((......))))......((((.(((...(((((....(((((....-(((((....)).......)))..))))).))))).....)))..))))... ( -21.21)
>DroSim_CAF1 19088 99 + 1
AAAUUGGUGUGUUCCAAAAAG--GAAAAUCCAAUUCAA--AAGCAGCCCGCGAAUGGCGGAAGUUAUAAAUUCCUAAGC-GGGCUGAUAUCAUGGCUAUUUAUA
.((((((....((((.....)--)))...))))))...--...((((((((..(((((....)))))..........))-)))))).................. ( -29.80)
>DroEre_CAF1 16051 99 + 1
AAAUUGGUGUGUUCCAAAAAG--GAAAACCGAAUUCAA--AGGCAGCCCGCGAAUAGCGGAAGUUAUAAAUUCCUAAGC-GGGCUGAUAUCAUGGCUAUUUAUA
...(((((...((((.....)--))).)))))......--...((((((((..(((((....)))))..........))-)))))).................. ( -30.50)
>DroYak_CAF1 17520 99 + 1
AAAUUGGUGUGUUCCAAAAAG--GAAAACCCAAUUCAA--AGGCAGCCCGCGAGUAGCGGAAGUUAUAAAUUCCUAAGC-GGGCUGAUAUCAUGGCUAUUUAUA
.((((((.((.((((.....)--))).))))))))...--...((((((((..(((((....)))))..........))-)))))).................. ( -32.10)
>DroAna_CAF1 25538 89 + 1
AAAUUGGCGUUUUCCAAAAAA--GAAA----------C--AGUCGGAGCGCGAAGAGCGGAAGUUAUAAAUUCCAAAGC-GGUCUGAUAUCAUAGCUAUUUAUA
....(((((((((........--))))----------)--.((((((.((((((.(((....))).....)))....))-).))))))......))))...... ( -22.20)
>consensus
AAAUUGGUGUGUUCCAAAAAG__GAAAACCCAAUUCAA__AGGCAGCCCGCGAAUAGCGGAAGUUAUAAAUUCCUAAGC_GGGCUGAUAUCAUGGCUAUUUAUA
...((((......))))..........................((((((((.....))((((........))))......)))))).................. (-18.33 = -17.87 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:26 2006