Locus 3193

Sequence ID 3R_DroMel_CAF1
Location 8,481,312 – 8,481,417
Length 105
Max. P 0.690644
window5176

overview

Window 6

Location 8,481,312 – 8,481,417
Length 105
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.23
Mean single sequence MFE -14.38
Consensus MFE -9.14
Energy contribution -9.87
Covariance contribution 0.72
Combinations/Pair 1.21
Mean z-score -1.56
Structure conservation index 0.64
SVM decision value 0.33
SVM RNA-class probability 0.690644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8481312 105 - 27905053
GCCCCACAUCCCAUUCCCA---UUCCCAUUCACACACAUAAAUAUAACUAGUACAAC-CACAUUGUACAAUCCAGCCACCGCAAUGAAUAUGGCUUGCGAAAGGCCAUU
...................---.....(((((..................((((((.-....))))))......((....))..)))))(((((((.....))))))). ( -16.60)
>DroSec_CAF1 16958 105 - 1
GCCCCACAUCCCAUUCCUA---UUUUCAAUCACACACAUAAAUACAAGUAGUACAAC-CACAUUGUACAAUCCAGCCACCGCAAUGAAUAUGGCUUGCGAAAGGCCAUU
...................---..((((......................((((((.-....))))))......((....))..)))).(((((((.....))))))). ( -15.60)
>DroSim_CAF1 18429 105 - 1
GCCCCACAUCCCAUUCCCA---UUUCCAAUCACACACAUAAAUACAAGUAGUACAAC-CACAUUGUACAAUCCAGCCACCGCAAUGAAUAUGGCUUGCGAAAGGCCAUU
(((.(.((..((((...((---((..........................((((((.-....))))))......((....))))))...))))..)).)...))).... ( -16.10)
>DroEre_CAF1 15406 99 - 1
GCCCCACAUCCCAAACCCA---UUCCCAUUCACAUACAUAA------GUAGUACAAC-CACAUUGUGCAAUCCAGCCACCGCAAUGAAUAUGGCUUGCGAAAGGCCAUU
...................---.....(((((.........------...((((((.-....))))))......((....))..)))))(((((((.....))))))). ( -16.60)
>DroYak_CAF1 16868 93 - 1
GCCCCACAUCC------CA---UUCCCAUUCACAUACAAAA------AUAGUACAAC-CACAUUGUGCAAUCCAGCCACCGCAAUGAAUAUGGCUUGCGAAAGGCCAUU
...........------..---.....(((((.........------...((((((.-....))))))......((....))..)))))(((((((.....))))))). ( -16.60)
>DroAna_CAF1 24886 89 - 1
GCCCCACAUCCCAUUCAUACAGUUUCCAAU-------AUA------AC-CGCACAACCCACAACCUAUAAUAGAGCC------AUGAAUAUGUUACGAGAAAGGCUUUU
..............................-------...------..-......................((((((------...................)))))). (  -4.81)
>consensus
GCCCCACAUCCCAUUCCCA___UUCCCAAUCACACACAUAA_____AGUAGUACAAC_CACAUUGUACAAUCCAGCCACCGCAAUGAAUAUGGCUUGCGAAAGGCCAUU
(((...............................................((((((......)))))).....(((((............))))).......))).... ( -9.14 =  -9.87 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:25 2006