Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,476,048 – 8,476,140 |
Length | 92 |
Max. P | 0.992990 |
Location | 8,476,048 – 8,476,140 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 96.85 |
Mean single sequence MFE | -22.36 |
Consensus MFE | -22.04 |
Energy contribution | -22.24 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.99 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.992990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8476048 92 - 27905053 UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCCCAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA (((((((((...(((((......(((((.(((((....))))))))))....)))))...........(((....)))...))))))))).. ( -22.90) >DroSec_CAF1 11782 92 - 1 UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCUCAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA (((((((((...(((((......(((((.(((((....))))))))))....)))))...........(((....)))...))))))))).. ( -22.90) >DroSim_CAF1 13190 92 - 1 UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCCAAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA (((((((((...(((((......(((((.(((((....))))))))))....)))))...........(((....)))...))))))))).. ( -22.90) >DroEre_CAF1 10230 92 - 1 UUAAAUAUACAUCGAUUACUAGGCUCGGCUUUCUCUUAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA ............((((.......(((((.(((((....)))))))))).....))))(((((......(((....)))......)))))... ( -20.40) >DroYak_CAF1 10275 92 - 1 UUAAAUUUACAUCGAUGACUAGGCUCGGCUUUCUCCGAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA ............(((((......(((((.(((((....))))))))))....)))))(((((......(((....)))......)))))... ( -22.70) >consensus UUAAGUUUACAUCGAUGACUAGGCUCGGCUUUCUCCCAAGAAACUGAGAACACGUCGCAAGUACUUAACCAGAAAUGGAAAUAGGCUUGGAA ............(((((......(((((.(((((....))))))))))....)))))(((((......(((....)))......)))))... (-22.04 = -22.24 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:24 2006