Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,462,479 – 8,462,679 |
Length | 200 |
Max. P | 0.996092 |
Location | 8,462,479 – 8,462,599 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -41.30 |
Consensus MFE | -36.24 |
Energy contribution | -36.60 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.79 |
Structure conservation index | 0.88 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8462479 120 + 27905053 GCUACUCAGUGGAGACGCACACGGUUCGCACUGGAGAUGGAUACAUUCUGGAUAUGUUUCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCGUCUGUUCUUAUCCAGC ((.(((..(((....)))....)))..)).((((((((((......((((((.....)))))).....)))))..........((((((((((((.....))))))).))))).))))). ( -36.10) >DroSec_CAF1 8338 120 + 1 GCUACCCGGUGGAGACGCACACGGUACGCACUGCAGAUGGAUACAUUCUAGAUAUGUUCCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCAUCUGUCCUCCUCCAGC ((((((..(((....)))....)))).))..(((((..(((.((((.......)))))))((....))...........)))))((((((((((...........))))))))))..... ( -40.70) >DroSim_CAF1 8805 120 + 1 GCUACCCGGUGGAGACGCACACGGUUCGCACUGCAGAUGGAUACAUUCUAGAUAUGUUCCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCAUCUGUCCUCCUCCAGC ((.(((..(((....)))....)))..))..(((((..(((.((((.......)))))))((....))...........)))))((((((((((...........))))))))))..... ( -38.60) >DroEre_CAF1 8342 120 + 1 GCUACCCGGUGGAGACGCACACGGUUCGCACUGGAGAUGGAUAUAUUCUGGAUAUGUUCCGGAUUCCCUCAUCACACAACUGCAAGGAGGACGGUAUCAAGCCGCCUGUCCUCCUCCAGC ((.(((..(((....)))....)))..)).((((((((((......((((((.....)))))).....)))))............((((((((((........))).)))))))))))). ( -45.00) >DroYak_CAF1 6984 120 + 1 GCUACCCGGUGGAGACGCACACGGUUCGCACUGGAGAUGGAUAUAUUCUGGAUAUGUUCCGGAUUCCCUCAUCACACAACUGCAAGGAGGACGGAGUCAAGCCGCCUGUCCUCCUCCAGC ((.(((..(((....)))....)))..)).((((((((((......((((((.....)))))).....)))))............(((((((((.((......)))))))))))))))). ( -46.10) >consensus GCUACCCGGUGGAGACGCACACGGUUCGCACUGGAGAUGGAUACAUUCUGGAUAUGUUCCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCGUCUGUCCUCCUCCAGC ((.(((..(((....)))....)))..)).((((((((((......((((((.....)))))).....)))))............(((((((((...........)))))))))))))). (-36.24 = -36.60 + 0.36)
Location | 8,462,519 – 8,462,639 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -41.61 |
Consensus MFE | -35.86 |
Energy contribution | -36.74 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -2.25 |
Structure conservation index | 0.86 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8462519 120 + 27905053 AUACAUUCUGGAUAUGUUUCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCGUCUGUUCUUAUCCAGCACGGACUGAUCAGCCUGGCCGAUUCCUUCCUGGUGACGGG ......((((((.....))))))..((((((((..((........))((((.((..((..((((.(((.((...(((.....)))..)).)))..)))).))..)).))))))))).))) ( -35.30) >DroSec_CAF1 8378 120 + 1 AUACAUUCUAGAUAUGUUCCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCAUCUGUCCUCCUCCAGCACGGCCUGAUCAGCCUGGCCGAUUCCUUCCUGAUGAUGGG ......((..((.....))..))..(((((((((......(((.((((((((((...........))))))))))...)))(((((.(......).))))).........)))))).))) ( -40.80) >DroSim_CAF1 8845 120 + 1 AUACAUUCUAGAUAUGUUCCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCAUCUGUCCUCCUCCAGCACGGCCUGAUCAGCCUGGCCGAUUCCUUUCUGGUGACGGG ......((..((.....))..))..(((((((((......(((.((((((((((...........))))))))))...)))(((((.(......).))))).........)))))).))) ( -40.20) >DroEre_CAF1 8382 120 + 1 AUAUAUUCUGGAUAUGUUCCGGAUUCCCUCAUCACACAACUGCAAGGAGGACGGUAUCAAGCCGCCUGUCCUCCUCCAGCACGGCCUGGUUGGCCUGGCAGACUCCUUCCUGAUGACGGG ......((((((.....))))))..(((((((((.....((((.(((((((((((........))).))))))))....((.((((.....)))))))))).........)))))).))) ( -46.74) >DroYak_CAF1 7024 120 + 1 AUAUAUUCUGGAUAUGUUCCGGAUUCCCUCAUCACACAACUGCAAGGAGGACGGAGUCAAGCCGCCUGUCCUCCUCCAGCACGGCAUGAUCAGCGUGGCAGACUCCUUCCUGGUGACGGG ......((((((.....))))))..((((((((......((....))((((.((((((..((((((((((..((........))...)).))).))))).)))))).))))))))).))) ( -45.00) >consensus AUACAUUCUGGAUAUGUUCCGGAUUCCCUCAUCACCCAACUGCAAGGAGGACGGUUUCAAGCCGUCUGUCCUCCUCCAGCACGGCCUGAUCAGCCUGGCCGAUUCCUUCCUGGUGACGGG ......((((((.....))))))..(((((((((......(((.((((((((((...........))))))))))...)))(((((.(......).))))).........)))))).))) (-35.86 = -36.74 + 0.88)
Location | 8,462,559 – 8,462,679 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -49.90 |
Consensus MFE | -41.40 |
Energy contribution | -43.24 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.21 |
Mean z-score | -1.64 |
Structure conservation index | 0.83 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8462559 120 + 27905053 UGCAAGGAGGACGGUUUCAAGCCGUCUGUUCUUAUCCAGCACGGACUGAUCAGCCUGGCCGAUUCCUUCCUGGUGACGGGACCGAGGAGCGGACUUCCAUUCAUGCUGGCCGAUCGCUGC .((((((((((((((.....))))))).)))))..((((((.((.((....))))((((((.((((((((((....)))))...))))))))....)))....))))))......))... ( -45.90) >DroSec_CAF1 8418 120 + 1 UGCAAGGAGGACGGUUUCAAGCCAUCUGUCCUCCUCCAGCACGGCCUGAUCAGCCUGGCCGAUUCCUUCCUGAUGAUGGGACCGAGGAACGGACUUCCAUUCAUGCUGGCCGAUCGCUGC .((.((((((((((...........))))))))))(((((((((((.(......).))))).(((((((((......))))...))))).((....)).....))))))......))... ( -46.30) >DroSim_CAF1 8885 120 + 1 UGCAAGGAGGACGGUUUCAAGCCAUCUGUCCUCCUCCAGCACGGCCUGAUCAGCCUGGCCGAUUCCUUUCUGGUGACGGGACCGGGGACCGGACUUCCGUUCAUGCUGGCCGAUCGCUGC .((.((((((((((...........))))))))))(((((((((((.(......).)))))...((((((((....)))))..)))((.(((....))).)).))))))......))... ( -50.90) >DroEre_CAF1 8422 120 + 1 UGCAAGGAGGACGGUAUCAAGCCGCCUGUCCUCCUCCAGCACGGCCUGGUUGGCCUGGCAGACUCCUUCCUGAUGACGGGACCGAAGAGCGGACUGCCGUUUAUGCUGGCCGACCGCUGC (((.(((((((((((........))).))))))))...)))((((..((((((((.(((((......(((((....)))))(((.....))).)))))((....)).)))))))))))). ( -55.50) >DroYak_CAF1 7064 120 + 1 UGCAAGGAGGACGGAGUCAAGCCGCCUGUCCUCCUCCAGCACGGCAUGAUCAGCGUGGCAGACUCCUUCCUGGUGACGGGACCAAAGAACGGACUGCCGUUCAUGCUAGCCGACCGCUGC ....((((((((((.((......)))))))))))).((((.(((((((.....)))((((.......(((((....))))).....((((((....)))))).)))).))))...)))). ( -50.90) >consensus UGCAAGGAGGACGGUUUCAAGCCGUCUGUCCUCCUCCAGCACGGCCUGAUCAGCCUGGCCGAUUCCUUCCUGGUGACGGGACCGAGGAACGGACUUCCGUUCAUGCUGGCCGAUCGCUGC (((.((((((((((...........))))))))))...)))((((..((((.(((.(((........(((((....))))).....((((((....))))))..)))))).)))))))). (-41.40 = -43.24 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:21 2006