Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,240,917 – 1,241,016 |
Length | 99 |
Max. P | 0.892406 |
Location | 1,240,917 – 1,241,016 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 73.74 |
Mean single sequence MFE | -27.14 |
Consensus MFE | -13.50 |
Energy contribution | -14.06 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.36 |
Mean z-score | -1.96 |
Structure conservation index | 0.50 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1240917 99 + 27905053 AGUAUUGCCUUUCGCGAGGGGAG--UUGGAGGGGAGGGGAAGGAUAAUGCCGCCGAUACAGC---------ACCAGCAAUGAAAAUCUCAUUAGCAUUAGGAUGUGAUAA- ..((((((...((....))((.(--(((....((.((.(........).)).))....))))---------.)).))))))...(((.((((........)))).)))..- ( -20.80) >DroSim_CAF1 14927 90 + 1 AGUAUUGUGCUUCGCGAGGGGAG--C---------GGGGAAGGAUAAUGCCGCCGAUACAGC---------ACCAGCAAUGAAAAUCGCAUUAGCAUUAGGAUGUGAUAA- .((((((..((((....)))).(--(---------((.(........).)))))))))).((---------....)).......((((((((........))))))))..- ( -23.90) >DroEre_CAF1 15283 90 + 1 AGCAUUGCUCCUCGCAAGGGGAG--C---------GGGGAGGUGUAAUGACGCCGAUACAGA---------GCCAGCGAUGAAAAUCGCAUUAGCAUUAGGCUGUGAUAA- ....(((((((((....))))))--)---------))...(((((....)))))....((.(---------(((.(((((....)))))..((....)))))).))....- ( -37.90) >DroYak_CAF1 21275 100 + 1 AGUAUUGCUCUUCGCAAGAGGAG--A---------GGGUAGGGGUGAAUCCGCUGAUACAGCAAUGCUGAUACCAGCAAUGAAAAUCGCAUUAGCAUUAGGAUGUGAUAAG .(((((.((((((....))))))--.---------....((.((.....)).)))))))..((.(((((....))))).))...((((((((........))))))))... ( -32.20) >DroAna_CAF1 15847 85 + 1 AUAAGUG-------ACAGGGGACGGC-------UAGGGAAAGG--GAUACCGCCAAUCCAGU---------GCCAGCAAUGAAAAUCGCAUUAGCAUUAGGAUGUGAUAA- ....((.-------...(....)(((-------...(((...(--(......))..)))...---------))).)).......((((((((........))))))))..- ( -20.90) >consensus AGUAUUGCUCUUCGCAAGGGGAG__C_________GGGGAAGGAUAAUGCCGCCGAUACAGC_________ACCAGCAAUGAAAAUCGCAUUAGCAUUAGGAUGUGAUAA_ ..((((((.((((....))))...............((...((......)).)).....................))))))...((((((((........))))))))... (-13.50 = -14.06 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:21 2006