Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,461,139 – 8,461,255 |
Length | 116 |
Max. P | 0.941549 |
Location | 8,461,139 – 8,461,255 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 98.85 |
Mean single sequence MFE | -45.03 |
Consensus MFE | -45.02 |
Energy contribution | -44.80 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.02 |
Mean z-score | -1.56 |
Structure conservation index | 1.00 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8461139 116 + 27905053 AGCGUUGCACUUCUUGGGUCACUCGCAGGGAUGCACCACGCUGGUGGUGCUCCUCAGCAUGCGACCGGAGUACAACAAGUUGGUCAAGACCGCAGUCCUAUUAGCUCCGGCUGUCU .((((((.(((((...((((.(..((.((((.(((((((....)))))))))))..))..).))))))))).)))).....(((....)))))........((((....))))... ( -43.90) >DroSec_CAF1 7040 116 + 1 AGCGUUGCACUUCUUGGGUCACUCGCAGGGAUGCACCACGCCGGUGGUGCUCCUCAGCAUGCGACCGGAGUACAACAAGUUGGUCAAGACCGCAGUCCUACUAGCUCCGGCUGUCU (((((((.(((((...((((.(..((.((((.(((((((....)))))))))))..))..).))))))))).)))).(((((((...(((....)))..)))))))...))).... ( -45.60) >DroSim_CAF1 7073 116 + 1 AGCGUUGCACUUCUUGGGUCACUCGCAGGGAUGCACCACGCUGGUGGUGCUCCUCAGCAUGCGACCGGAGUACAACAAGUUGGUCAAGACCGCAGUCCUACUAGCUCCGGCUGUCU (((((((.(((((...((((.(..((.((((.(((((((....)))))))))))..))..).))))))))).)))).(((((((...(((....)))..)))))))...))).... ( -45.60) >consensus AGCGUUGCACUUCUUGGGUCACUCGCAGGGAUGCACCACGCUGGUGGUGCUCCUCAGCAUGCGACCGGAGUACAACAAGUUGGUCAAGACCGCAGUCCUACUAGCUCCGGCUGUCU (((((((.(((((...((((.(..((.((((.(((((((....)))))))))))..))..).))))))))).)))).(((((((...(((....)))..)))))))...))).... (-45.02 = -44.80 + -0.22)
Location | 8,461,139 – 8,461,255 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 98.85 |
Mean single sequence MFE | -47.60 |
Consensus MFE | -47.60 |
Energy contribution | -47.60 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 1.00 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8461139 116 - 27905053 AGACAGCCGGAGCUAAUAGGACUGCGGUCUUGACCAACUUGUUGUACUCCGGUCGCAUGCUGAGGAGCACCACCAGCGUGGUGCAUCCCUGCGAGUGACCCAAGAAGUGCAACGCU .....((((.((((....)).)).))))............(((((((((.((((((.(((.(.((((((((((....))))))).)))).))).))))))...).))))))))... ( -47.60) >DroSec_CAF1 7040 116 - 1 AGACAGCCGGAGCUAGUAGGACUGCGGUCUUGACCAACUUGUUGUACUCCGGUCGCAUGCUGAGGAGCACCACCGGCGUGGUGCAUCCCUGCGAGUGACCCAAGAAGUGCAACGCU .....((((.((((....)).)).))))............(((((((((.((((((.(((.(.((((((((((....))))))).)))).))).))))))...).))))))))... ( -47.60) >DroSim_CAF1 7073 116 - 1 AGACAGCCGGAGCUAGUAGGACUGCGGUCUUGACCAACUUGUUGUACUCCGGUCGCAUGCUGAGGAGCACCACCAGCGUGGUGCAUCCCUGCGAGUGACCCAAGAAGUGCAACGCU .....((((.((((....)).)).))))............(((((((((.((((((.(((.(.((((((((((....))))))).)))).))).))))))...).))))))))... ( -47.60) >consensus AGACAGCCGGAGCUAGUAGGACUGCGGUCUUGACCAACUUGUUGUACUCCGGUCGCAUGCUGAGGAGCACCACCAGCGUGGUGCAUCCCUGCGAGUGACCCAAGAAGUGCAACGCU .....((((.((((....)).)).))))............(((((((((.((((((.(((.(.((((((((((....))))))).)))).))).))))))...).))))))))... (-47.60 = -47.60 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:18 2006