Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,460,263 – 8,460,423 |
Length | 160 |
Max. P | 0.986990 |
Location | 8,460,263 – 8,460,383 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -31.97 |
Energy contribution | -32.30 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.85 |
Structure conservation index | 0.99 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8460263 120 + 27905053 CACCACAUGGACUUCGUGCACUCUAUGACCGUCGCUAAUGUGAUUAACAAGCCGGUCAUUGAAAUUUUUAAAAGGUUUGAGCAACCUAUCGACUGUAAAGGAAGUCUAUAAUAAAUAAUA ......(((((((((.((((.((.(((((((..(((..(((.....))))))))))))).............(((((.....)))))...)).))))...)))))))))........... ( -31.40) >DroSec_CAF1 6166 119 + 1 CACCACAUGGACUUCGUGCACUCCAUGACCGUCGCUAAUGUGAUCAACAAGCCGGUCAUUGAAAUUUUUAAAAGGUUUGAGCAACCUAUCGACUGUG-AGGAAGUCUAUAAUAAAUAAUA ......(((((((((.(.(((((.(((((((..(((..(((.....))))))))))))).))..........(((((.....))))).......)))-).)))))))))........... ( -32.90) >DroSim_CAF1 6224 119 + 1 CACCACAUGGACUUCGUGCACUCCAUGACCGUCGCUAAUGUGAUCAACAAGCCGGUCAUUGAAAUUUUUAAAAGGUUUGAGCAACCUAUCGACUGUG-AGGAAGUCUAUAAUAAAUAAUA ......(((((((((.(.(((((.(((((((..(((..(((.....))))))))))))).))..........(((((.....))))).......)))-).)))))))))........... ( -32.90) >consensus CACCACAUGGACUUCGUGCACUCCAUGACCGUCGCUAAUGUGAUCAACAAGCCGGUCAUUGAAAUUUUUAAAAGGUUUGAGCAACCUAUCGACUGUG_AGGAAGUCUAUAAUAAAUAAUA ......(((((((((.(.(((((.(((((((..(((..(((.....))))))))))))).))..........(((((.....))))).......))).).)))))))))........... (-31.97 = -32.30 + 0.33)
Location | 8,460,263 – 8,460,383 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.77 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -31.71 |
Energy contribution | -31.27 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.73 |
Structure conservation index | 1.02 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8460263 120 - 27905053 UAUUAUUUAUUAUAGACUUCCUUUACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUAAUCACAUUAGCGACGGUCAUAGAGUGCACGAAGUCCAUGUGGUG .......(((((((((((((...(((....((.(((((.....))))).)).......((.(((((((..((((((((...))))))))))))))).)))))...))))))..))))))) ( -30.00) >DroSec_CAF1 6166 119 - 1 UAUUAUUUAUUAUAGACUUCCU-CACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUGAUCACAUUAGCGACGGUCAUGGAGUGCACGAAGUCCAUGUGGUG .......(((((((((((((..-(((....((.(((((.....))))).)).......((.(((((((..((((((((...))))))))))))))).)))))...))))))..))))))) ( -31.60) >DroSim_CAF1 6224 119 - 1 UAUUAUUUAUUAUAGACUUCCU-CACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUGAUCACAUUAGCGACGGUCAUGGAGUGCACGAAGUCCAUGUGGUG .......(((((((((((((..-(((....((.(((((.....))))).)).......((.(((((((..((((((((...))))))))))))))).)))))...))))))..))))))) ( -31.60) >consensus UAUUAUUUAUUAUAGACUUCCU_CACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUGAUCACAUUAGCGACGGUCAUGGAGUGCACGAAGUCCAUGUGGUG .......(((((((((((((...(((....((.(((((.....))))).)).......((.(((((((..((((((((...))))))))))))))).)))))...))))))..))))))) (-31.71 = -31.27 + -0.44)
Location | 8,460,303 – 8,460,423 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.10 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -28.80 |
Energy contribution | -29.13 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.97 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8460303 120 - 27905053 AAAGACCGGACGUAGUCGAUAAUGGCGGGCUGGUACUCGAUAUUAUUUAUUAUAGACUUCCUUUACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUAAUCA ...(((........)))(((..((((((((((((....((.(((..........((((........))))((.(((((.....))))).))...))).))....))))))))))))))). ( -28.60) >DroSec_CAF1 6206 119 - 1 AAAGACCAGACGUUGUCGAUCAUGGCGGGCUGGUACUCCAUAUUAUUUAUUAUAGACUUCCU-CACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUGAUCA ...(((........)))(((((..((((((((((....................((((....-...))))((.(((((.....))))).)).............))))))))))))))). ( -30.20) >DroSim_CAF1 6264 119 - 1 AAAGACCAGACGUAGUCGAUCAUGGCGGGCUGGUACUCCAUAUUAUUUAUUAUAGACUUCCU-CACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUGAUCA ...(((........)))(((((..((((((((((....................((((....-...))))((.(((((.....))))).)).............))))))))))))))). ( -30.40) >consensus AAAGACCAGACGUAGUCGAUCAUGGCGGGCUGGUACUCCAUAUUAUUUAUUAUAGACUUCCU_CACAGUCGAUAGGUUGCUCAAACCUUUUAAAAAUUUCAAUGACCGGCUUGUUGAUCA ...(((........)))(((((..((((((((((....................((((........))))((.(((((.....))))).)).............))))))))))))))). (-28.80 = -29.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:16 2006