Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,459,546 – 8,459,666 |
Length | 120 |
Max. P | 0.885397 |
Location | 8,459,546 – 8,459,666 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -41.88 |
Consensus MFE | -36.26 |
Energy contribution | -36.14 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.54 |
Structure conservation index | 0.87 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8459546 120 + 27905053 CCGCUUUCAUUGACUACAUUCUGGGCACCACAAAUCAAAGUGCGGUGCACUACGUGGGUCACUCACAGGGAUGCACCACGCUGGUGGUGCUACUCAGCAUGCGUCCGGAGUAUAACCAGU ........((((..((.((((((((((((((.......((((.((((((((..(((((...)))))..)).)))))).)))).)))))(((....)))....))))))))).))..)))) ( -43.70) >DroSec_CAF1 5446 120 + 1 CCGCUUUCAUUGACUACAUUUUGGCCACCACAAAUCAAAGUGCGGUGCACUAUGUGGGUCACUCACAGGGAAGCACCACGCUGGUGGUGCUCCUCAGCAUGCGUCCGGAGUAUAACCAGU ..((((((..((((..((((((((..........))))))))..)).))...((((((...)))))).)))))).....((((((.(((((((...((....))..))))))).)))))) ( -39.40) >DroSim_CAF1 5504 120 + 1 CCGCUUUUAUUGACUACAUUUUGGCCACCACAAAUCAAAGUGCGGUGCACUAUGUGGGUCACUCACAGGGAUGCACCACGCUGGUGGUGCUCCUCAGCAUGCGCCCGGAGUAUAACCAGU ................((((((((..........)))))))).((((((((.((((((...)))))).)).))))))..((((((.(((((((...((....))..))))))).)))))) ( -42.20) >DroEre_CAF1 5604 120 + 1 CCGCAUCCAUAGACUACAUUCUGGCCACUACAAAUCAGAGUGCGUUGCACUACGUGGGUCACUCGCAGGGUUGCACCACGCUGGUGGUGCUCCUCAGCAUGCGGCCGCAAUACAACCAGU ..((......(((......)))((((...........(((((..(..(.....)..)..)))))((.(((..(((((((....)))))))..))).))....))))))............ ( -39.40) >DroYak_CAF1 5565 120 + 1 CCGCAUCCAUGGACUACAUUCUGGCCACUACGAAUCAGAGUGCGUUGCACUACGUGGGUCACUCGCAGGGUUGCACCACGCUGGUGGUGCUCCUCAGCAUGCGGCCGGAGUACAAUCAGU (((......))).....(((((((((.(((((......(((((...))))).))))).......((.(((..(((((((....)))))))..))).))....)))))))))......... ( -44.70) >consensus CCGCUUUCAUUGACUACAUUCUGGCCACCACAAAUCAAAGUGCGGUGCACUACGUGGGUCACUCACAGGGAUGCACCACGCUGGUGGUGCUCCUCAGCAUGCGGCCGGAGUAUAACCAGU .................(((((((((...((........))(((.(((.....(((((...))))).(((..(((((((....)))))))..))).)))))))))))))))......... (-36.26 = -36.14 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:11 2006