Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,454,934 – 8,455,033 |
Length | 99 |
Max. P | 0.836727 |
Location | 8,454,934 – 8,455,033 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -28.36 |
Energy contribution | -28.67 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.19 |
Mean z-score | -2.12 |
Structure conservation index | 0.77 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.836727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8454934 99 - 27905053 CUCGAUGAAGCUUUCGUCAAAGAUGCCCUCGUCGCCGCGGAAGGGCAUCUGCCGCUUCCAUGCCUUUCCUGGGAGUGGUGGCACCACAAUCUGC--GGGGA--------- ..((((((.((..((......)).))..))))))(((((((..((...(..(((((((((.........)))))))))..)..))....)))))--))...--------- ( -39.30) >DroVir_CAF1 905 99 - 1 CUCGAUGAAGUUCUCGUCAAAGAGACCCUCAUCGCCGCGGAAUGGCAUCUGUCGCUUCCAGGCCUUGCCCGGCAAUGGCGGCACCACAAUCUGC--AAAAA--------- ..((((((.(.((((......)))).).))))))..(((((.((.....(((((((.((.(((...))).))....)))))))...)).)))))--.....--------- ( -35.80) >DroPse_CAF1 656 95 - 1 CUCGAUGAAGCUCUCGUCGAAGAUGCCCUCGUCGCCGCGGAAUGGCAUCUGCCUCUUCCAGGCUUUCCCCGGCAGCGGCGGCACCACAAUCUUA--A------------- .(((((((.....)))))))((((......((((((((((((.(((....)))..))))..(((......))).))))))))......))))..--.------------- ( -38.00) >DroGri_CAF1 1034 110 - 1 CUCGAUGAAGUUCUCGUCGAAGAGGCCCUCGUCGCCGCGGAACGGCAUCUGUCGCUUCCAGGCCUUGCCAGGCAGUGGCGGCACCACAAUCUAAACAACAAUUAGUGUAA .(((((((.....))))))).(((...)))((((((((((((((((....)))).))))..((((....)))).))))))))...(((..((((.......))))))).. ( -39.50) >DroAna_CAF1 901 96 - 1 CUCAAUGAAACUCUCGUCAAAGAUGCCCUCGUCGCCCCGGAAUGGCAUCUGCCGUUUCCAGGCCUUUCCGGGUAGUGGCGGCACCACAAUCUGA--A---A--------- .(((((((.....))))....(.((((...((((((((((((.(((..(((.......)))))).)))))))..))))))))).)......)))--.---.--------- ( -29.60) >DroPer_CAF1 650 95 - 1 CUCGAUGAAGCUCUCGUCGAAGAUGCCCUCGUCGCCGCGGAAUGGCAUCUGCCUCUUCCAGGCUUUCCCCGGCAGCGGCGGCACCACAAUCUUA--A------------- .(((((((.....)))))))((((......((((((((((((.(((....)))..))))..(((......))).))))))))......))))..--.------------- ( -38.00) >consensus CUCGAUGAAGCUCUCGUCAAAGAUGCCCUCGUCGCCGCGGAAUGGCAUCUGCCGCUUCCAGGCCUUCCCCGGCAGUGGCGGCACCACAAUCUGA__A___A_________ ...(((((.....)))))..((((......(((((((((((..(((....)))...)))..(((......))).))))))))......)))).................. (-28.36 = -28.67 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:03 2006