Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,231,384 – 1,231,481 |
Length | 97 |
Max. P | 0.879055 |
Location | 1,231,384 – 1,231,481 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 90.85 |
Mean single sequence MFE | -21.27 |
Consensus MFE | -18.98 |
Energy contribution | -18.87 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.89 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1231384 97 + 27905053 UUGUACUU---AUUU---UCAGUCGAAUGCGUCAAUAGUGAAAUUGAAAUUGAUUUCUUCCUAGUAUGUGCAUCAAUUUCUCUACUACUUGACACUAUUGACA (((.(((.---....---..))))))....((((((((((.....(((((((((..(..........)...)))))))))((........)))))))))))). ( -20.60) >DroSec_CAF1 4828 103 + 1 UUGUACUUCUUCUUCUUAUCAGUCAAAGGCGUCAAUAGUGAAAUUUAAAUGGAUUUCUUCCGAGUAUGUGCAUCAAUUUCUCUACUACUUGACACUAUUGACA .....................(((((.((.((((((((((..........(((.....)))(((...((......))..)))))))).))))).)).))))). ( -22.30) >DroSim_CAF1 5034 100 + 1 UUGUACAUCUUCUUC---UCAGUCGAAUGCGUCAAUAGUGAAAUUUAAAUGGAUUUCUUCCGAGUAUGUGCAUCAAUUUCUCUACUACUUGACACUAUUGACA ..(((..((..((..---..))..)).)))((((((((((..........(((.....)))(((((.(((............))))))))..)))))))))). ( -20.90) >consensus UUGUACUUCUUCUUC___UCAGUCGAAUGCGUCAAUAGUGAAAUUUAAAUGGAUUUCUUCCGAGUAUGUGCAUCAAUUUCUCUACUACUUGACACUAUUGACA ..............................((((((((((((((((....)))))))...((((((.(((............)))))))))..))))))))). (-18.98 = -18.87 + -0.11)
Location | 1,231,384 – 1,231,481 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.85 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -17.03 |
Energy contribution | -17.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.34 |
Structure conservation index | 0.76 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1231384 97 - 27905053 UGUCAAUAGUGUCAAGUAGUAGAGAAAUUGAUGCACAUACUAGGAAGAAAUCAAUUUCAAUUUCACUAUUGACGCAUUCGACUGA---AAAU---AAGUACAA .((((((.(((((((.((((.(((((((((((.................)))))))))....)))))))))))))))).)))...---....---........ ( -21.53) >DroSec_CAF1 4828 103 - 1 UGUCAAUAGUGUCAAGUAGUAGAGAAAUUGAUGCACAUACUCGGAAGAAAUCCAUUUAAAUUUCACUAUUGACGCCUUUGACUGAUAAGAAGAAGAAGUACAA .(((((..(((((((.((((.((((....((((.......((....))....))))....)))))))))))))))..)))))..................... ( -23.70) >DroSim_CAF1 5034 100 - 1 UGUCAAUAGUGUCAAGUAGUAGAGAAAUUGAUGCACAUACUCGGAAGAAAUCCAUUUAAAUUUCACUAUUGACGCAUUCGACUGA---GAAGAAGAUGUACAA .((((((((((....(((...((....))..)))......((....))...............))))))))))((((.(..((..---..))..))))).... ( -22.20) >consensus UGUCAAUAGUGUCAAGUAGUAGAGAAAUUGAUGCACAUACUCGGAAGAAAUCCAUUUAAAUUUCACUAUUGACGCAUUCGACUGA___GAAGAAGAAGUACAA .((((((((((....(((...((....))..)))........(((.....)))..........)))))))))).............................. (-17.03 = -17.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:20 2006