Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,441,680 – 8,441,777 |
Length | 97 |
Max. P | 0.539212 |
Location | 8,441,680 – 8,441,777 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.89 |
Mean single sequence MFE | -31.80 |
Consensus MFE | -17.77 |
Energy contribution | -18.05 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.26 |
Mean z-score | -1.93 |
Structure conservation index | 0.56 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8441680 97 + 27905053 UCCGCAGGAUGUGCGCAAUGUCAAAAGCAAGGUUUUAUAAAUG-GCCCGAGGGCCAGGAGCGGACCGCCAAAGUCAGCUG-CAGCAUCCUGGCAUCCUU ...(((((((((..(((.((.(....((..(((((......((-(((....))))).....)))))))....).))..))-).))))))).))...... ( -33.60) >DroPse_CAF1 104426 91 + 1 UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACGUUUGAUAAAUGGGCCCCAGGGCCAGGAGCGAACCACCAAAGUCAGCUCCCAGCGUCCUG-------- ....((((((((......(((((((.......)))))))..((((((....)))).(((((..((.......))..)))))))))))))))-------- ( -32.60) >DroGri_CAF1 113430 81 + 1 UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACAUUUGAUAAAUG-GUCCACGGGCGUGGUGCG-ACCAGCAAAGCUUGC----AAAAU------------ ...(((((...(((....(((((((.......)))))))..((-((((((.......))).)-)))))))...)))))----.....------------ ( -26.30) >DroSec_CAF1 102638 97 + 1 UCCGCAGGAUGUGCGCAAUGUCAAAAGCAAGGUUUGAUAAAUG-GCCCGAGGGCCAGGAGCGGACCACCAAAGUCAGCUG-CAGCAUCCUGGCAUCCUU ...(((((((((((((..(((.....))).((((((.....((-(((....)))))....))))))..........)).)-)).)))))).))...... ( -36.30) >DroAna_CAF1 107453 92 + 1 UCCGCAGGAUGUGCGCAAUGUCAAAAGCAAGGUUUGAUAUAUG-GCCCUCGGGUCAGGAGCGAACCGCCAAAGUCGGUUU-UAGUAUCCUGGAU----- ....(((((((..(((.((((((((.......)))))))).((-(((....)))))...)))((((((....).))))).-...)))))))...----- ( -29.40) >DroPer_CAF1 106302 91 + 1 UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACGUUUGAUAAAUGGGCCCCAGGGCCAGGAGCGAACCACCAAAGUCAGCUCCCAGCGUCCUG-------- ....((((((((......(((((((.......)))))))..((((((....)))).(((((..((.......))..)))))))))))))))-------- ( -32.60) >consensus UCCGCAGGAUGUGCGCAAUGUCAAAAGCAACGUUUGAUAAAUG_GCCCCAGGGCCAGGAGCGAACCACCAAAGUCAGCUC_CAGCAUCCUG________ ....((((((((.(((..(((((((.......))))))).....(((....))).....))).........((....))....))))))))........ (-17.77 = -18.05 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:57 2006