Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,424,545 – 8,424,642 |
Length | 97 |
Max. P | 0.997110 |
Location | 8,424,545 – 8,424,642 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.28 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -20.96 |
Energy contribution | -21.68 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.05 |
Mean z-score | -3.27 |
Structure conservation index | 0.88 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8424545 97 + 27905053 UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCACCACCAACAAUAUCCA ............(((((((.(...(((((.....)))))((....))..).))))))).....(((((((...)))))))................. ( -25.70) >DroSec_CAF1 85741 97 + 1 UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCACCACCAACAAUAUCCA ............(((((((.(...(((((.....)))))((....))..).))))))).....(((((((...)))))))................. ( -25.70) >DroSim_CAF1 87419 97 + 1 UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCACCACCAACAAUAUCCA ............(((((((.(...(((((.....)))))((....))..).))))))).....(((((((...)))))))................. ( -25.70) >DroEre_CAF1 88291 94 + 1 UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUAGCAACAAAGCGCAAAUGGAAGCGUGGCUCCUAGAGCUCCA---CCAACAAUAUCCA ....(((.(...(((((((.....(((((.....)))))..((......)))))))))...).)))((((...))))....---............. ( -20.90) >DroYak_CAF1 88255 94 + 1 UAUACACACAAGCAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUAGAAGCGGAGCUCCUAGAGCUCCA---CCAACAAUAUCCA ...........((((((((.(...(((((.....)))))((....))..).))))))....))(((((((...))))))).---............. ( -23.90) >DroAna_CAF1 88954 78 + 1 UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAA-CGCCGCUCGUGGAGC------------------GA ............(((((((.(...(((((.....)))))((....))..).)))))))...-...(((((...))))------------------). ( -20.60) >consensus UAUACACACAAACAUUUGCACAGUUCAAUGCACAAUUGAUGGCAACAAAGCGCAAAUGGAAGCGGGGCUCCUAGAGCUCCA___CCAACAAUAUCCA ............(((((((.....(((((.....)))))..((......))))))))).....(((((((...)))))))................. (-20.96 = -21.68 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:54 2006