Locus 3174

Sequence ID 3R_DroMel_CAF1
Location 8,421,854 – 8,421,956
Length 102
Max. P 0.508684
window5143

overview

Window 3

Location 8,421,854 – 8,421,956
Length 102
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 86.46
Mean single sequence MFE -25.75
Consensus MFE -16.65
Energy contribution -17.69
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -1.93
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.508684
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8421854 102 - 27905053
AAGUUAGCUCUGUUGAUAGAAUGCCAUUUUGUUCCAUUUACAGCAUCUCCUCGUCUGCGACAGCAACAGCUCUGUA-----AAC----GGCUGUAACCCAUUAACACACUU
..(((((..((((((.((((.........((((........))))........))))))))))..((((((.....-----...----))))))......)))))...... ( -19.83)
>DroSec_CAF1 83095 102 - 1
AAGGUAGCUCUGUUAAUAGAGUGCCAUUUUGUCCCAUUUACAGCAUCUCGCCGUUUGCGGCAGCAACAGCUCUGUA-----AAC----GGCUGUAACCCAUUAACACACUU
..((((.(((((....)))))))))............(((((.......(((((((((((.(((....))))))))-----)))----))))))))............... ( -31.11)
>DroSim_CAF1 84668 102 - 1
AGGGUAGCUCUGUUAAUAGAGUGCCAUUUUGUCCAAUUUACAGCAUCUCCUUGUCUGUGACAGCAACAGCUCUGUA-----AAC----GGCUGUAACCCAUUAACACACUU
.((((.((.(((((.(((((((......(((((......((((((......)).))))))))).....))))))).-----)))----))..)).))))............ ( -29.20)
>DroEre_CAF1 85419 102 - 1
AAGGUAGCUCUGUUAAUAGAGUGCGAUUACUUACCAUUUACAGCCUCUCCUCGUCUGCGGCAGCAACAGCUCUGUA-----AAC----GGCUGUAACCCAUUAACACACAU
..((((((((((....)))))).........))))..((((((((.......((.(((((.(((....))))))))-----.))----))))))))............... ( -26.11)
>DroYak_CAF1 85429 110 - 1
AAGCUAUCUCUGUAAAUAGAGUGUCAUU-UUUCCCAUUUACAGCAUCUCCUCGUCUGCGGCAGCAACUGCUCUGUACUGUAAGCUCUGGGCUGUAACCCAUUAACACACAU
.((((....((((((((.(((.......-.)))..))))))))............(((((.(((....)))))))).....)))).((((......))))........... ( -22.50)
>consensus
AAGGUAGCUCUGUUAAUAGAGUGCCAUUUUGUCCCAUUUACAGCAUCUCCUCGUCUGCGGCAGCAACAGCUCUGUA_____AAC____GGCUGUAACCCAUUAACACACUU
..((((.(((((....)))))))))............(((((((...........(((((.(((....)))))))).............)))))))............... (-16.65 = -17.69 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:53 2006