Locus 3173

Sequence ID 3R_DroMel_CAF1
Location 8,419,636 – 8,419,739
Length 103
Max. P 0.899459
window5142

overview

Window 2

Location 8,419,636 – 8,419,739
Length 103
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 82.38
Mean single sequence MFE -32.85
Consensus MFE -21.70
Energy contribution -22.15
Covariance contribution 0.45
Combinations/Pair 1.06
Mean z-score -3.18
Structure conservation index 0.66
SVM decision value 1.01
SVM RNA-class probability 0.899459
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8419636 103 - 27905053
GGUAUAGAAAUUGUCAUCUCAUAACGACUUAAGCUGCUCGGCACGCAACAUGACCGG-----GCUGAGCAGCAUAGUCAGCAUUUCUGCA------CCUCCCAGAAUCCAGCCC
(((.(((((((((......))....((((...((((((((((.((.........)).-----))))))))))..))))...))))))).)------))................ ( -32.30)
>DroSec_CAF1 80888 103 - 1
GGUAUAGAAAUUGUCAUCUCAUAACGACUUAAGCUGCUCGGCACGCAACAUGACCGG-----GCUGAGCAGCUUAGUCAUCAUUUCUGCA------CCUCCCAGAAUCCAGCCC
(((.(((((((((......))....((((.((((((((((((.((.........)).-----))))))))))))))))...))))))).)------))................ ( -35.10)
>DroEre_CAF1 83169 103 - 1
GGUAUAGAAAUUGUCAUCUCAUAACGACUUAAGCUGCUCAGCACGCAACAUGACCGG-----GCUGAGCAGCAUAGUCAGCAUUUCUGCA------CCUCCCAGAAUCCAGCCC
(((.(((((((((......))....((((...((((((((((.((.........)).-----))))))))))..))))...))))))).)------))................ ( -33.00)
>DroWil_CAF1 97213 111 - 1
---AUCGUCAUCGUCAUCUCAUAACGACUUAAGCUUCUCAGCACGCAGCCUGACUAAGCUCAGCUGAGCAGCAUAGUCAGCAAUUCUGCAGGAGCAUCUCAUAUAAGACAUCAC
---...(((.((((.........)))).....(((((((((......((.((((((.((((....))))....))))))))....))).))))))...........)))..... ( -28.50)
>DroYak_CAF1 83170 103 - 1
GGUAUAGAAAUUGUCAUCUCAUAACGACUUAAGCUGCUCGGCACGCAACAUGACCGG-----GCUGAGCAGCAUAGUCAGCAUUUCUGCA------CCUCCCAGAAUCCAGCCC
(((.(((((((((......))....((((...((((((((((.((.........)).-----))))))))))..))))...))))))).)------))................ ( -32.30)
>DroAna_CAF1 83404 85 - 1
GGUGUAGGAAUUGUCAUCUCAGAACGACUUAAGCUGCUCGGCACGCAACAUGAC----------UGAGCAGCGUAGUCAGCAUUUCUGCA------CCUCC-------------
(((((((((((..((......))..((((...(((((((((((.......)).)----------))))))))..))))...)))))))))------))...------------- ( -35.90)
>consensus
GGUAUAGAAAUUGUCAUCUCAUAACGACUUAAGCUGCUCGGCACGCAACAUGACCGG_____GCUGAGCAGCAUAGUCAGCAUUUCUGCA______CCUCCCAGAAUCCAGCCC
.........................((((...((((((((((....................))))))))))..)))).(((....)))......................... (-21.70 = -22.15 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:52 2006