Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,407,766 – 8,407,868 |
Length | 102 |
Max. P | 0.779992 |
Location | 8,407,766 – 8,407,868 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 78.29 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -17.00 |
Energy contribution | -16.80 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.82 |
Structure conservation index | 0.63 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8407766 102 - 27905053 AGGUCUAUUAGAGAAAAUAACCAAGGCAAAUACGACCGAGGCUCAAAGGAGCUGCGUGGUUUAUGUUUGGUGUCAAGGUUCCACAUUCCCCACUGG----GCACUU- .(((.((((......)))))))....((((((.(((((.(((((....)))))...)))))..))))))(((((.((...............)).)----))))..- ( -24.76) >DroSec_CAF1 69653 80 - 1 AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCGAGGCUCAAAGGAGCUGCGUGGUUUGUGUUUGGUGUCAAGGUU--------------------------- .(((.((((......)))))))....((((((((((((.(((((....)))))...))).)))))))))...........--------------------------- ( -22.60) >DroSim_CAF1 69229 80 - 1 AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCAAGGCUCAAAGGAGCUGCGUGGUUUGUGUUUGGUGUCAAGGUU--------------------------- .(((.((((......)))))))....((((((((((((.(((((....)))))...))).)))))))))...........--------------------------- ( -23.30) >DroEre_CAF1 71841 102 - 1 AGGUCUAUUAGGGGAAAUAACCAAGGCAAAUACGAACGAGGCUCAAAGGAGCUCCGUGGUUUAUGUUUGGUGACAGAGCUCCAGUUUCCCUAGUGG----AUAUUC- ..((((((((((((((........(((((((....(((..((((....))))..))).))))...((((....)))))))....))))))))))))----))....- ( -36.40) >DroYak_CAF1 71652 107 - 1 AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCGAGGCUCAAAGGAGCUCCGUGGUUUAUGUUUGGUGUCAAGGUUCCAGUUUCCCUAUUGGGUAAAUAUCCA ...((((.(((.((((((((((..(.((((((.(((((.(((((....)))))...)))))..)))))).).....))))...))))))))).)))).......... ( -28.70) >consensus AGGUCUAUUAGAGGAAAUAACCAAAGCAAAUACGACCGAGGCUCAAAGGAGCUGCGUGGUUUAUGUUUGGUGUCAAGGUUCCA__UUCCC_A_UGG______A____ .(((.((((......)))))))..(.((((((.(((((.(((((....)))))...)))))..)))))).).................................... (-17.00 = -16.80 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:51 2006