Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,400,962 – 8,401,065 |
Length | 103 |
Max. P | 0.551228 |
Location | 8,400,962 – 8,401,065 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 95.47 |
Mean single sequence MFE | -17.97 |
Consensus MFE | -17.51 |
Energy contribution | -17.73 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8400962 103 + 27905053 AAAACAUUUUAAAAUUCUUUACAAAUAUCGAAACUGGCAAAGAAAAAAAUUAAAAUCACAAUAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAG .....(((((((..((((((.((...........))..)))))).....)))))))..........((((.(((..(.(((.....)))..)..))).)))). ( -16.30) >DroSec_CAF1 62817 103 + 1 AAAACAUUUUAAAAUUCUUUAUUAAUAACGAAAUUGGCAAAGAAAAAUAUUAAAAUCACAAAAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAA .....(((((((..((((((.(((((......))))).)))))).....))))))).........(((((.(((..(.(((.....)))..)..))).))))) ( -18.80) >DroSim_CAF1 61983 103 + 1 AAAACAUUUUAAAAUUCUUUAUUAAUAUCGAAAUUGGCAAAGAAAAAUAUUAAAAUCACAAAAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAA .....(((((((..((((((.(((((......))))).)))))).....))))))).........(((((.(((..(.(((.....)))..)..))).))))) ( -18.80) >consensus AAAACAUUUUAAAAUUCUUUAUUAAUAUCGAAAUUGGCAAAGAAAAAUAUUAAAAUCACAAAAAAUUGUGGCCAUGACAGCCUUUAGCUUUUUGUGGGCGCAA .....(((((((..((((((.(((((......))))).)))))).....))))))).........(((((.(((..(.(((.....)))..)..))).))))) (-17.51 = -17.73 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:49 2006