Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,375,379 – 8,375,473 |
Length | 94 |
Max. P | 0.577291 |
Location | 8,375,379 – 8,375,473 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 82.93 |
Mean single sequence MFE | -17.19 |
Consensus MFE | -9.96 |
Energy contribution | -11.92 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.14 |
Mean z-score | -2.00 |
Structure conservation index | 0.58 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8375379 94 - 27905053 ----CAGUAAAUUAUUUUUACUACAUU-UUCACGCCC---AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGGAAUUAAUAAACACUAUGCUGUCA ----(((((............((((((-(((.(((..---....))))))))))))..(((((((....)))))))..................)))))... ( -18.90) >DroSec_CAF1 37085 99 - 1 UACCCAGUCAAUUAUUUUUAAUACGUUUUUCACGCCC---AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGAAAUUAAUAAACACUAUACUGCCA ......((..((((.((((..((((((((((((....---....))))))))))))..(((((((....))))))).)))).))))..))............ ( -19.60) >DroSim_CAF1 36123 97 - 1 UAGUCAGUCAAUUAUUUUUACUACGUUUUUCACGCCC---AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGAAAUUAAUAAACACUAC--AGUCA ((((..((..((((.((((..((((((((((((....---....))))))))))))..(((((((....))))))).)))).))))..)))))).--..... ( -19.80) >DroEre_CAF1 38306 99 - 1 UAGGAAGUCAAUUAUUUUUACUACAUUUUUCAAGCCAUUUUUCAGAGGAAAAUGUUAAAUACAAACAUUUUUGUUUCGAAAAUAACAAACA---UACAGUCA ..(((((...................))))).....((((((.(((.(((((((((.......))))))))).))).))))))........---........ ( -11.21) >DroYak_CAF1 37999 98 - 1 UAGGCAGUCAAUUAUUUUUAAUACACUUUUUUAGCCC---UUCAGUGGAA-ACGUAAAGUACAAAUAUUUUUGUUUCGAAAAUAACAAACACUAUACUGUCA ..((((((...((((((((....((((..........---...))))(((-(((.((((((....))))))))))))))))))))..........)))))). ( -16.44) >consensus UAGGCAGUCAAUUAUUUUUACUACAUUUUUCACGCCC___AUCAGUGGAAAAUGUAAAAGACAAAUAUUUUUGUUUCGAAAUUAAUAAACACUAUACUGUCA ......((..((((.((((..((((((((((((...........))))))))))))..(((((((....))))))).)))).))))..))............ ( -9.96 = -11.92 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:35 2006