Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,371,677 – 8,371,776 |
Length | 99 |
Max. P | 0.777943 |
Location | 8,371,677 – 8,371,776 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 95.40 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -30.64 |
Energy contribution | -31.28 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.41 |
Structure conservation index | 0.87 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8371677 99 - 27905053 GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG---CACGCCACCUGAGU (((((((((((....)))....(((((....))))).....))).))))).(.((((((((....)))))))))..((((.....---..))))........ ( -35.70) >DroSec_CAF1 33471 99 - 1 GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG---CAUGCCACCUGAGU (((..((((((....(..(...(((((....))))).)..).))))))...((((((((((....))))))))..((....)).)---)..)))........ ( -34.20) >DroSim_CAF1 32427 99 - 1 GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG---CACGCCACCUGAGU (((((((((((....)))....(((((....))))).....))).))))).(.((((((((....)))))))))..((((.....---..))))........ ( -35.70) >DroEre_CAF1 34624 100 - 1 GGCCACCAGCCUUUUGGCCUUUUCCGCAUUCGUGAAUGAACUGGCUGGCUAG--AAAAGCCUCUGGGUUUUGCGAAGGCGACUAGCAGCACGCCACCUGAGU (((...(((((....((......)).((((....))))....)))))(((((--.((((((....))))))((....))..))))).....)))........ ( -31.20) >DroYak_CAF1 34363 97 - 1 GGCCACCAGCCUUUUGGCCUUAUUCGCAUUCGUGAAUGAACUGGCUGGCUAG--CAAAGCCUCUGGGUUUUGCGAAGGCGACUAG---CACGCCACCUGAGU (((((((((((....))).((((((((....))))))))..))).))))).(--(((((((....))))))))...((((.....---..))))........ ( -39.70) >consensus GGCCACCAGCCUUUUGGCCUUUUUCGCAUUCGUGAAUGAACUGGCUGGCUAGCGCAAAGCCUCUGGGUUUUGCCAAGGCGACUAG___CACGCCACCUGAGU (((((((((((....)))....(((((....))))).....))).)))))...((((((((....))))))))...((((..........))))........ (-30.64 = -31.28 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:34 2006