Locus 3159

Sequence ID 3R_DroMel_CAF1
Location 8,366,874 – 8,366,969
Length 95
Max. P 0.922403
window5117

overview

Window 7

Location 8,366,874 – 8,366,969
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -29.68
Consensus MFE -22.19
Energy contribution -22.55
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -1.63
Structure conservation index 0.75
SVM decision value 1.15
SVM RNA-class probability 0.922403
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8366874 95 - 27905053
UGGCUG-AAUGUCUAAAAUGGCUGCUAGCUGCGCGUAGGCAAUAAGCCCAAGUGCAGCAGUUCCACUUUUCCGCCCUUUUCCGCGCUCU----CCCCCUC
.((..(-(.(((..((((.(((.(((.(((((((...(((.....)))...))))))))))...........))).))))..))).)).----.)).... ( -28.00)
>DroSec_CAF1 28935 86 - 1
UGGCUG-AAUGGCUAAAAUGGCUGCUAGCUGCGCGUAGGCAAUAAGCCCAAGUGCAGCAGUUCCACUUUUCCGCGCUCCA-------------CCCGCUC
(((((.-...)))))...(((..(((.(((((((...(((.....)))...)))))))))).))).......(((.....-------------..))).. ( -29.20)
>DroSim_CAF1 27515 86 - 1
UGGCUG-AAUGGCUAAAAUGGCUGCUAGCUGCGCGUAGGCAAUAAGCCCAAGUGCAGCAGUUCCACUUUUCCGCGCUCCA-------------CCCGCCC
(((..(-..(((..(((.(((..(((.(((((((...(((.....)))...)))))))))).))).))).)))..).)))-------------....... ( -28.90)
>DroEre_CAF1 29841 78 - 1
UGGCUG-AAUGGCUAAAAUGGCUGCUAGCUGCGCGUAGGCAAUAAGCCGAAGUGCAGCAGUUCCGCUUUUCCGCCCUUU---------------------
.(((.(-((.(((......((..(((.(((((((...(((.....)))...)))))))))).))))).))).)))....--------------------- ( -31.60)
>DroYak_CAF1 29430 99 - 1
UGGCUG-AAUGGCUAAAAUGGCUGCUAGCUGCGCGUAGGCAAUAAGCCGAAGUGCAGCAGUACCACUUUUCCGCCCUUUUCCGCGCCCUUCCCUCCGCCC
.(((.(-((.(((.....(((.((((.(((((((...(((.....)))...)))))))))))))).......((........))))).))).....))). ( -35.70)
>DroAna_CAF1 29878 88 - 1
UGGCUGGAAUGGCUGAAAUGACGGCGAAGUGCGCGUAGGCAAUAAGCCAAAGUGCAGCC----CGAU---GCUCCCUCUU-CGAAUUCU----CCUCCCC
.((..(((...((((......))))(((((((((...(((.....)))...)))))((.----....---)).....)))-)......)----))..)). ( -24.70)
>consensus
UGGCUG_AAUGGCUAAAAUGGCUGCUAGCUGCGCGUAGGCAAUAAGCCCAAGUGCAGCAGUUCCACUUUUCCGCCCUCUU_____________CCCGCCC
(((((.....)))))...(((..(((.(((((((...(((.....)))...)))))))))).)))................................... (-22.19 = -22.55 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:29 2006