Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,365,254 – 8,365,390 |
Length | 136 |
Max. P | 0.962049 |
Location | 8,365,254 – 8,365,364 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 84.24 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -24.45 |
Energy contribution | -24.32 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.25 |
Mean z-score | -1.57 |
Structure conservation index | 0.80 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8365254 110 + 27905053 UUACUACUAUUAUAAAAUCGAAAAAUCAGGCUUAUGAAAGUGUGAGUCGGCCGAAAAAAGGCUUAUUCGCCCACACUGGCAUUGGUUGCCAUGGGGCAUUGUGCCUGUUG ..........................(((((............((((.((((.......)))).))))((((.((.(((((.....))))))))))).....)))))... ( -35.00) >DroSec_CAF1 27453 110 + 1 UGACUACUAUUAUAAAAUGGGAAAAUUAGGCUUGUGAAAGUGUGAGUCGGCUGAAAAAAGGACUAUUCGCCCACACUGGCAAUGGUUGCCAUGGGGCAUUGUGCCUGUUG .(((..(((((....))))).....(((.((((....)))).))))))(((.(((..........)))((((.((.(((((.....))))))))))).....)))..... ( -29.60) >DroSim_CAF1 26137 100 + 1 UUACUACUAUUAUAAAAUCGAAAAAUUAGGCUU----------GAGUUGGCUGAAAAAAGGACUAUUUGCCCACACUGGCAUUGGUUGCCAUGGGGCAUUGUGCCUGUUG ..........................(((((..----------.((((..((......))))))...(((((.((.(((((.....))))))))))))....)))))... ( -25.40) >DroYak_CAF1 27962 109 + 1 UUACAACUAUUAUAAUAACGG-AAAUUACGUUUGUGGAAGAGAGAGUCGGCUCAAAAAAGGCUUAUUCGUCCACACUGGCAUUGGUUGCCAUGGCACAUUGUGCCCGUUG ...((((.........((((.-......))))((((((.(((.(((((...........))))).))).)))))).(((((.....))))).(((((...))))).)))) ( -31.80) >consensus UUACUACUAUUAUAAAAUCGAAAAAUUAGGCUUGUGAAAGUGUGAGUCGGCUGAAAAAAGGACUAUUCGCCCACACUGGCAUUGGUUGCCAUGGGGCAUUGUGCCUGUUG ..........................(((((............((((.((((.......)))).))))((((.((.(((((.....))))))))))).....)))))... (-24.45 = -24.32 + -0.13)
Location | 8,365,254 – 8,365,364 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 84.24 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -17.86 |
Energy contribution | -17.55 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.65 |
Structure conservation index | 0.71 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8365254 110 - 27905053 CAACAGGCACAAUGCCCCAUGGCAACCAAUGCCAGUGUGGGCGAAUAAGCCUUUUUUCGGCCGACUCACACUUUCAUAAGCCUGAUUUUUCGAUUUUAUAAUAGUAGUAA ...(((((....((((....))))....(((..((((((((((.....(((.......))))).))))))))..)))..))))).......................... ( -30.70) >DroSec_CAF1 27453 110 - 1 CAACAGGCACAAUGCCCCAUGGCAACCAUUGCCAGUGUGGGCGAAUAGUCCUUUUUUCAGCCGACUCACACUUUCACAAGCCUAAUUUUCCCAUUUUAUAAUAGUAGUCA .....(((.....(((((((((((.....))))).)).))))(((..........))).)))((((.((..................................)))))). ( -24.08) >DroSim_CAF1 26137 100 - 1 CAACAGGCACAAUGCCCCAUGGCAACCAAUGCCAGUGUGGGCAAAUAGUCCUUUUUUCAGCCAACUC----------AAGCCUAAUUUUUCGAUUUUAUAAUAGUAGUAA ....((((....((((((((((((.....))))).)).))))).......((......)).......----------..))))........................... ( -21.30) >DroYak_CAF1 27962 109 - 1 CAACGGGCACAAUGUGCCAUGGCAACCAAUGCCAGUGUGGACGAAUAAGCCUUUUUUGAGCCGACUCUCUCUUCCACAAACGUAAUUU-CCGUUAUUAUAAUAGUUGUAA ((((.(((((...))))).(((((.....))))).((((((.((....(.(((....))).).......)).))))))((((......-.)))).........))))... ( -25.00) >consensus CAACAGGCACAAUGCCCCAUGGCAACCAAUGCCAGUGUGGGCGAAUAAGCCUUUUUUCAGCCGACUCACACUUUCACAAGCCUAAUUUUCCGAUUUUAUAAUAGUAGUAA .....(((.....(((((((((((.....))))).)).))))(((........)))...)))................................................ (-17.86 = -17.55 + -0.31)
Location | 8,365,294 – 8,365,390 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 74.10 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -15.48 |
Energy contribution | -16.96 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.20 |
Mean z-score | -2.11 |
Structure conservation index | 0.54 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.962049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8365294 96 + 27905053 UGUGAGUCGGCCGAAAAAAGGCUUAUUCGCCCACACUGGCAUUGGUUGCCAUGGGGCAUUGUGCCUGUUGUCAAUACAUUGGUACAAAGA-----GGAAAA ...((((.((((.......)))).))))((((.((.(((((.....))))))))))).(((((((...(((....)))..)))))))...-----...... ( -36.50) >DroSec_CAF1 27493 96 + 1 UGUGAGUCGGCUGAAAAAAGGACUAUUCGCCCACACUGGCAAUGGUUGCCAUGGGGCAUUGUGCCUGUUGUCAAUACAUUGGUACAAAGG-----GUAAAA ....((((..((......))))))((((((((.((.(((((.....))))))))))).(((((((...(((....)))..))))))).))-----)).... ( -29.90) >DroSim_CAF1 26170 93 + 1 ---GAGUUGGCUGAAAAAAGGACUAUUUGCCCACACUGGCAUUGGUUGCCAUGGGGCAUUGUGCCUGUUGUCAAUACAUUGGUACAAAGG-----GUGAAA ---...((.(((...............(((((.((.(((((.....))))))))))))(((((((...(((....)))..)))))))..)-----)).)). ( -29.80) >DroYak_CAF1 28001 96 + 1 AGAGAGUCGGCUCAAAAAAGGCUUAUUCGUCCACACUGGCAUUGGUUGCCAUGGCACAUUGUGCCCGUUGUCAUUACAUUGGUACAAAGA-----UGAAAA ...((((.((((.......)))).))))(((((...(((((.....)))))))).)).(((((((...(((....)))..)))))))...-----...... ( -25.90) >DroAna_CAF1 28643 84 + 1 ----------------AAUUGCUGAUUUGUCAGAACUGGUAUUGGUGCUUGGGGGCCAUUGUUC-UCCAGCCAAUACAUUGCUACAAAGACACAAAGAAAA ----------------..(((.((.(((((.((.....((((((((....((((((....))))-))..))))))))....)))))))..)))))...... ( -21.40) >consensus _G_GAGUCGGCUGAAAAAAGGCUUAUUCGCCCACACUGGCAUUGGUUGCCAUGGGGCAUUGUGCCUGUUGUCAAUACAUUGGUACAAAGA_____GGAAAA ............................((((.((.(((((.....))))))))))).(((((((...((......))..))))))).............. (-15.48 = -16.96 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:28 2006