Locus 3157

Sequence ID 3R_DroMel_CAF1
Location 8,364,062 – 8,364,157
Length 95
Max. P 0.747575
window5113

overview

Window 3

Location 8,364,062 – 8,364,157
Length 95
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.12
Mean single sequence MFE -23.43
Consensus MFE -15.98
Energy contribution -16.73
Covariance contribution 0.75
Combinations/Pair 1.09
Mean z-score -1.78
Structure conservation index 0.68
SVM decision value 0.47
SVM RNA-class probability 0.747575
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8364062 95 - 27905053
------UUUUGGCCAGUUUUGUGUGUGCGCAUUCCGCACGCGAAAUUCCUC------UCUAUUUUAGUAAAAAAAAAAUGCACUUUGCACUGAGUUUGCUCUGCAUA
------....((..(((((((((((((.......)))))))))))))))..------....................(((((....(((.......)))..))))). ( -20.60)
>DroSec_CAF1 26245 92 - 1
------UUUUGGCCAGUUUUGUGUGUGCGCAUUCCGCACGCGAAAUUCCUC------UCUAUUUCAGCGAA---AAAAUGCACUUCGCACUGAGUUAGCUGUGCAUA
------.....(((((((....(((((((.....)))))))(((((.....------...))))).(((((---.........)))))........))))).))... ( -25.10)
>DroSim_CAF1 23249 92 - 1
------UUUUGGCCAGUUUUGUGUGUGCGCAUUCCGCACGCGAAAUUCCUC------UCUAUUUCAGCGAA---AAAAUGCACUUCGCACUGAGUUAGCUGUGCAUA
------.....(((((((....(((((((.....)))))))(((((.....------...))))).(((((---.........)))))........))))).))... ( -25.10)
>DroEre_CAF1 27244 97 - 1
------UUUUGGCCAGUUUUGUGUGUGCGCAUUCCGCACGCGAAAUUCCUCCAUUCCCCUAUUUCAACGAA----AAAUGCACUUCGCACUGAGUUAACUCUGCAUA
------.....((...(((((((((((((.....)))))))(((((..............))))).)))))----)...)).....(((..(((....))))))... ( -23.14)
>DroYak_CAF1 26806 97 - 1
------UUUUGGCCAGUUUUGUGUGUGCGCAUUCCGCACGCGAAAUUCCUCUAUUCCUCUAUUUCAACGAA----AAAUGCACUUCACAGUGAGUUAACUCUGCAUA
------.....((...(((((((((((((.....)))))))(((((..............))))).)))))----)...))........(((((....))).))... ( -20.94)
>DroAna_CAF1 26858 91 - 1
AACAGCUUUCGGCAAGUU----GUGUGUGCAUUCCGCAUAGAAAAUGCCUU------UCCAUUUC---GCA---AAAAUUCACUGCGAACAGAGUUAACUCUGAAUA
..........((((..((----.((((((.....)))))).))..))))..------.....(((---(((---.........))))))(((((....))))).... ( -25.70)
>consensus
______UUUUGGCCAGUUUUGUGUGUGCGCAUUCCGCACGCGAAAUUCCUC______UCUAUUUCAGCGAA___AAAAUGCACUUCGCACUGAGUUAACUCUGCAUA
..........((..(((((((((((((.......)))))))))))))))............................(((((.........(((....)))))))). (-15.98 = -16.73 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:25 2006