Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,356,697 – 8,356,816 |
Length | 119 |
Max. P | 0.878123 |
Location | 8,356,697 – 8,356,788 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -14.67 |
Consensus MFE | -8.53 |
Energy contribution | -9.45 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.08 |
Mean z-score | -2.07 |
Structure conservation index | 0.58 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8356697 91 - 27905053 CACACAAUACCAGGGCACAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAACGCACACAAGCACACACACAAAGCCAAUUUGAAGCCCUUUU ...........(((((..................(((..((((((......)).))))))).......((((.....))))..)))))... ( -18.80) >DroPse_CAF1 20547 72 - 1 CU--GAGUGCC-GGGCACACGAAUAAUCUUGCACGCUCCUGUGGCU----C------------UCACACAAAGCCGACUCGAAGCCUUUUU .(--((((((.-((((...(((......)))...)).)).))((((----.------------........)))).))))).......... ( -13.30) >DroSec_CAF1 18936 79 - 1 CACACAAUACCAACGCACAUAAAUAAUCUGGCCCGCUUUUGUGGCCAAAAC------------ACACACAAAGCCAAUUUGAAGCCCUUUU ..............((............(((((.((....)))))))....------------.....((((.....))))..))...... ( -11.80) >DroSim_CAF1 15860 79 - 1 CACACAAUACCAACGCACAUAAAUAAUCUGGCCCGCUUUUGUGGCCAAAAC------------ACACACAAAGCCAAUUUGAAGCCCUUUU ..............((............(((((.((....)))))))....------------.....((((.....))))..))...... ( -11.80) >DroEre_CAF1 20309 83 - 1 CACACAAUACCUGGGCUCAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAACACAC--------UCACACAAAGCCAAUUUGAAGCCCUUUU ............(((((...........(((.((((....)))).))).......--------.....((((.....)))).))))).... ( -16.20) >DroYak_CAF1 19145 87 - 1 CACACAAUACUUGGGCACAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAACACACAC----ACACACACAAAGCCAAUUUGAAGCCCUUUU ............((((............(((.((((....)))).))).........----.......((((.....))))..)))).... ( -16.10) >consensus CACACAAUACCAGGGCACAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAAC____________ACACACAAAGCCAAUUUGAAGCCCUUUU ............((((..............((.(((....))))).......................((((.....))))..)))).... ( -8.53 = -9.45 + 0.92)
Location | 8,356,721 – 8,356,816 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 79.99 |
Mean single sequence MFE | -15.90 |
Consensus MFE | -8.66 |
Energy contribution | -9.58 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.09 |
Mean z-score | -2.51 |
Structure conservation index | 0.54 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8356721 95 - 27905053 UACUCAAAAACAUCAAAGUGCCCCCAAACACACAAUACCAGGGCACAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAACGCACACAAGCACACAC .................((((...................(((((............)))))....(((((((......)).))))))))).... ( -19.70) >DroSec_CAF1 18960 83 - 1 UACUCAAAAACAUCAAAGUGCCCGCAAACACACAAUACCAACGCACAUAAAUAAUCUGGCCCGCUUUUGUGGCCAAAAC------------ACAC .................((((.....................))))..........(((((.((....)))))))....------------.... ( -12.20) >DroSim_CAF1 15884 83 - 1 UACUCAAAAACAUCAAAGUGCCCGCAAACACACAAUACCAACGCACAUAAAUAAUCUGGCCCGCUUUUGUGGCCAAAAC------------ACAC .................((((.....................))))..........(((((.((....)))))))....------------.... ( -12.20) >DroEre_CAF1 20333 87 - 1 UACUCGAAAACAUCAAAGUGCCUGCAAACACACAAUACCUGGGCUCAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAACACAC--------UCAC ................((((..........(((((....(((((..............)))))...))))).........)))--------)... ( -14.15) >DroYak_CAF1 19169 91 - 1 UACUCAAGAACAUCAAAGUGCCCGCAAACACACAAUACUUGGGCACAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAACACACAC----ACACAC ....(((((........(((((((...............)))))))........))))).((((....)))).............----...... ( -17.55) >DroPer_CAF1 19529 73 - 1 GACUCG---ACAUCAAAGUGGCCGCAAACG--GAGUGCC-GGGCACACGAAUAAUCUUGCACGCUCCUGUGGCU----C------------UCAC ......---..........(((((((...(--(((((..-..(((...((....)).))).)))))))))))))----.------------.... ( -19.60) >consensus UACUCAAAAACAUCAAAGUGCCCGCAAACACACAAUACCAGGGCACAUAAAUAAUCUUGCCCGCUUUUGUGGCCAAAAC____________ACAC .................((((((.................))))))............((.(((....)))))...................... ( -8.66 = -9.58 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:21 2006