Locus 3153

Sequence ID 3R_DroMel_CAF1
Location 8,355,087 – 8,355,185
Length 98
Max. P 0.812462
window5107

overview

Window 7

Location 8,355,087 – 8,355,185
Length 98
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -28.27
Consensus MFE -16.45
Energy contribution -18.65
Covariance contribution 2.20
Combinations/Pair 1.15
Mean z-score -2.27
Structure conservation index 0.58
SVM decision value 0.65
SVM RNA-class probability 0.812462
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8355087 98 + 27905053
--------GCGC-CCUUUCAAAAACCCAGUGCCACAAUUGUGGUCCGGUCAAAAGCUUCUGGCUUUAUUUGGCCUGAUGAAGCAUAGAAA-AUUGUGCGGGGCUUGCA
--------((((-(((((((........(..((((....))))..)((((((((((.....)))...)))))))...))))((((((...-.)))))))))))..)). ( -34.00)
>DroSec_CAF1 17378 91 + 1
----------------UUCAAAAAACCAGUGCCACAAUUUUGGCCCGGCCAAAAGCUUCUGGCUUUAUUUGGCCUGAUGAAGCAUAAAAA-AUUGUGCGGGGAUUGCA
----------------.........((..(((.(((((((((((...)))....(((((.((((......))))....)))))....)))-)))))))).))...... ( -27.00)
>DroSim_CAF1 14293 91 + 1
----------------UUCAAAAACCCAGUGCCACAAUUUUGGCCCGGCCAAAAGCUUCUGGCUUUAUUUGGCCUGAUGAAGCAUAAAAA-AUUGUGCGGGACUUGCA
----------------........(((.(.((((......)))).)((((((((((.....)))...))))))).......((((((...-.)))))))))....... ( -28.50)
>DroEre_CAF1 18701 105 + 1
UGCCCCUUGUCC-CC-UUCAAAAACCCAGUGCCACAAUUUUGGCCCGGCCAAAAGCUUCUGGCUUUAUUUGGCCUGAUGAAGCAUACAAA-AUUGUACGCGGCUUGCA
.(((........-..-((((........(.((((......)))).)((((((((((.....)))...)))))))...))))((.((((..-..)))).)))))..... ( -28.60)
>DroYak_CAF1 17473 97 + 1
--------GCCC-CC-UUUAAAAACCCAGUGCCACAUAUUUGGCCCGGCCAAAAGCUUCUGGCUUUAUUUGGCCCGAUGAAGCAUACAAA-AUUGUGCGGGGCUUGCA
--------((((-(.-............(.((((......)))).)((((((((((.....)))...))))))).......(((((....-..))))))))))..... ( -32.70)
>DroAna_CAF1 18188 92 + 1
--------ACAUCACUCACAAAAAGACCCUGCCCCAAA--------AACCAAAAGCUACUGGCUUUAUUCGGCCUGAUGAAGCAUAAAAAUAUUUUGCGGGGCUUGCA
--------..............(((.((((((......--------...((........))((((((((......)))))))).............)))))))))... ( -18.80)
>consensus
________GC_C_CC_UUCAAAAACCCAGUGCCACAAUUUUGGCCCGGCCAAAAGCUUCUGGCUUUAUUUGGCCUGAUGAAGCAUAAAAA_AUUGUGCGGGGCUUGCA
..................(((...(((.(.((((......)))).)((((((((((.....)))))...))))).......((((((.....)))))))))..))).. (-16.45 = -18.65 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:20 2006