Locus 3152

Sequence ID	3R_DroMel_CAF1
Location	8,351,922 – 8,352,015
Length	93
Max. P	0.846794

overview

Window 6

Location	8,351,922 – 8,352,015
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	95.48
Mean single sequence MFE	-27.46
Consensus MFE	-23.56
Energy contribution	-24.32
Covariance contribution	0.76
Combinations/Pair	1.03
Mean z-score	-1.54
Structure conservation index	0.86
SVM decision value	0.77
SVM RNA-class probability	0.846794
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8351922 93 + 27905053
CGCAAAGCAGUCCCAAAGCGCAACGCGGUUCCAUUCGAUCGUCCGACUAUUAAGUUAAUAGUUCCAGCGCUUCCGGAGUGUCCUGUCCUGUCC
.(((..(((.(((..((((((...((((((......))))))..((((((((...))))))))...))))))..))).)))..)))....... ( -28.30)
>DroSec_CAF1 14118 93 + 1
CGCAAAGCAGUCCCAAAGCGCAACGCGGUCCCAUUCGAUCGUCCGACUAUUAAGUUAAUAGUUCCAGCGCUUCCGGAGUGUCCAGUCCUGUCC
......(((.(((..((((((...((((((......))))))..((((((((...))))))))...))))))..))).)))............ ( -27.80)
>DroSim_CAF1 11001 93 + 1
CGCAAAGCAGUCCCAAAGCGCAACGCGGUCCCAUUCGAUCGUCCGACUAUUAAGUUAAUAGUUCCAGCGCUUCCGGAGUGUCCUGUCCUGUCC
.(((..(((.(((..((((((...((((((......))))))..((((((((...))))))))...))))))..))).)))..)))....... ( -30.20)
>DroEre_CAF1 15412 88 + 1
CGCAAAGCAGUCCCAAAGCGCAACGCGGUCCCAUUCGAUCAUCCGACUAUUAAGUUAAUAGGUCCAGCGCUUCCGGAGUGUCCU-----GUCC
.(((..(((.(((..((((((.....((((......))))....((((((((...))))).)))..))))))..))).)))..)-----)).. ( -25.90)
>DroYak_CAF1 14188 93 + 1
CGCAAAGCAGUCCCAAAGCGCAACGCGGUUCCAUUCGAUCAUCCGACUAUUAAGUUAAUAGGUCCAGCGCUUCCGGAGUGUCCUGUCCUGUCC
.(((..(((.(((..((((((....(((.((.....))....))).((((((...)))))).....))))))..))).)))..)))....... ( -25.10)
>consensus
CGCAAAGCAGUCCCAAAGCGCAACGCGGUCCCAUUCGAUCGUCCGACUAUUAAGUUAAUAGUUCCAGCGCUUCCGGAGUGUCCUGUCCUGUCC
.(((..(((.(((..((((((...((((((......))))))..((((((((...)))))).))..))))))..))).)))..)))....... (-23.56 = -24.32 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:19 2006