Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,350,188 – 8,350,291 |
Length | 103 |
Max. P | 0.508621 |
Location | 8,350,188 – 8,350,291 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.05 |
Mean single sequence MFE | -25.91 |
Consensus MFE | -9.35 |
Energy contribution | -9.11 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.18 |
Mean z-score | -1.81 |
Structure conservation index | 0.36 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8350188 103 - 27905053 AUUAUAUGUGUGAACUAAUUGGACGGCCAACGCAAAGUUAUAUUUC--GAUGCAUUGUUUCUUUUUAUCCGACAGAU-------------AUGUCGAAAUGGAAAGUGACCUUGUUCA ..((((..((((......((((....))))))))....))))....--((.(((..(((.((((((((.(((((...-------------.)))))..)))))))).)))..))))). ( -21.00) >DroSec_CAF1 12312 103 - 1 AUUAUAUGUGCGAACUAAUUGGACGACCAACGCAAAGUAAUAUUUC--GAUGUGUUGUUACUUUUUAUCCGACAGAU-------------AUGUCGGUAUGGAAAGUGACCUUGUUCA ...........((((.....((.....(((((((..(........)--..)))))))(((((((((((((((((...-------------.)))))).)))))))))))))..)))). ( -31.50) >DroSim_CAF1 9217 105 - 1 AUUAUAUGUGCGAACUAAUUGGACGACCAACGCAAAGUUAUAUUUUUGUAUGUGUUGUUACCUUUUAUCCGACAGAU-------------AUGUCGGUAUGGAAAGUGACCUUGUUCA ...........((((.....((.....(((((((....((((....)))))))))))((((.((((((((((((...-------------.)))))).)))))).))))))..)))). ( -27.10) >DroEre_CAF1 13619 111 - 1 AUUAUAUGUGCGAACUAAUUGGACAGCCAACGCAACGGUGUAUUUC--GAUGU---ACUUCUAUUUAUCUGACAGAUAAAUAAA--UGAUAUGUCGAAAUGGAAUGUGGCCAUGUUCA ...(((((.((.......((((....))))((((....(.((((((--(((((---((...((((((((.....))))))))..--.).)))))))))))).).)))))))))))... ( -28.70) >DroYak_CAF1 12338 103 - 1 AUUAUAUGUGCGAACUAAUUGGACAACCAACGCAAAGU----------GA--U---GCUUCCUUUUGUCGGACAGAUAAAUAAAACUAAAAUGUCGUAAUGGAAUGUGUCCUUGUACA ......(((((((.......(((((.(((.(((((((.----------((--.---...)).))))).))((((.................))))....)))....)))))))))))) ( -21.24) >consensus AUUAUAUGUGCGAACUAAUUGGACGACCAACGCAAAGUUAUAUUUC__GAUGU_UUGUUUCUUUUUAUCCGACAGAU_____________AUGUCGAAAUGGAAAGUGACCUUGUUCA ........((((......((((....))))))))....................................((((.................))))(((..((.......))...))). ( -9.35 = -9.11 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:16 2006