Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,346,445 – 8,346,595 |
Length | 150 |
Max. P | 0.994556 |
Location | 8,346,445 – 8,346,540 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.42 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -12.28 |
Energy contribution | -14.28 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.54 |
Structure conservation index | 0.51 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994556 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8346445 95 + 27905053 UC--U-----------------------CCCCACAUCUAACCACUUGUCACAGCGCAAAACCACGCCAAACGUAAUGGCAUAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGC ..--.-----------------------...............((((..(((((..........((((.......))))....(((((((((.....)))))..)))))))))..)))). ( -24.90) >DroSec_CAF1 8542 95 + 1 UC--C-----------------------CCCACCAUCUAACCACCUGUCACAGCGCAAAACCACGCCAAACGUAAUGGCAUAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGC ..--.-----------------------..................((.(((((..........((((.......))))....(((((((((.....)))))..)))))))))))..... ( -23.40) >DroSim_CAF1 5485 95 + 1 UC--C-----------------------CCCACUAUCUAACCACCUGUCACAGCGCAAAACCACGCCAAACGUAAUGGCAUAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGC ..--.-----------------------..................((.(((((..........((((.......))))....(((((((((.....)))))..)))))))))))..... ( -23.40) >DroEre_CAF1 9731 120 + 1 CCUAGCUCCUAGCUCCUAGCUCCUAACUCCUAACCCCUAACCACUCGUCACGGAGCAAAACCACGCCAAACGUAAUAGCAUAUGGCAUGCAUCAUAUGUGCAGAGUCCGUUGGACUAAGC ..(((.(((..((((...(((((............................)))))........((((...((....))...)))).(((((.....))))))))).....))))))... ( -23.59) >DroYak_CAF1 8413 118 + 1 UC--CCUCCCAACUUCCAACUCCCACCUCCUAACCACUAACCACUCGUCACAGUGCAAAGCCACGCCAAAUGUAAUGGCAUAUGGCAUUCAUCAUAUGUGCCGAGUCCGGUAGACUAAGC ..--................................(((.(((((((.(((((((......)))((((.((((....)))).))))..........)))).)))))..)))))....... ( -25.80) >consensus UC__C_______________________CCCAACAUCUAACCACUUGUCACAGCGCAAAACCACGCCAAACGUAAUGGCAUAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGC ..............................................((.(((((..........((((.......))))....(((((((((.....)))))..)))))))))))..... (-12.28 = -14.28 + 2.00)
Location | 8,346,500 – 8,346,595 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 81.76 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -15.49 |
Energy contribution | -16.26 |
Covariance contribution | 0.77 |
Combinations/Pair | 1.11 |
Mean z-score | -3.01 |
Structure conservation index | 0.54 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8346500 95 + 27905053 UAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGCGCUUUGGUUGGCUCCUUCCGUUGGCCAAGCAGUGCACCACUGCUUUCCAU------UUCCU .((((...(((......((((((.(((((((......))))..(((((..((.......))..))))))))))))))...)))...))))------..... ( -32.90) >DroSec_CAF1 8597 99 + 1 UAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGCUCUUUGGCC--UUCCUUCCGUUGGCCAAGCAGUGCACCACUGCUUUCCAUUUCCAUUUCCU .((((...(((......((((((.(((.(((......)))...((((((--...........)))))))))))))))...)))...))))........... ( -30.00) >DroSim_CAF1 5540 99 + 1 UAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGCUCUUUGGCC--UUCCUUCCGUUGGCCAAGCAGUGCACCACUGCUUUCCAUUUCCAUUUCUU .((((...(((......((((((.(((.(((......)))...((((((--...........)))))))))))))))...)))...))))........... ( -30.00) >DroEre_CAF1 9811 83 + 1 UAUGGCAUGCAUCAUAUGUGCAGAGUCCGUUGGACUAAGCU------------CCUUCCGCUGGCCAAGCUG------GCUGUUUUCCAGUUCCAUUUCUU ..((((.(((((.....))))).(((((...))))).(((.------------......))).))))(((((------(.......))))))......... ( -21.60) >DroYak_CAF1 8491 99 + 1 UAUGGCAUUCAUCAUAUGUGCCGAGUCCGGUAGACUAAGCUCUUUGGCC--UUCCUUCCGUGGGCCAAGCAGUGCACCACUGCUUUCCAUUUCCAUUUCCU ...(((((.........)))))((((..((....))..)))).((((((--(.........)))))))((((((...)))))).................. ( -28.50) >consensus UAUGGCAUGCAUCAUAUGUGCACAUGCCGCUGUACUAAGCUCUUUGGCC__UUCCUUCCGUUGGCCAAGCAGUGCACCACUGCUUUCCAUUUCCAUUUCCU ..((((.(((((.....)))))......(((......))).......................))))(((((((...)))))))................. (-15.49 = -16.26 + 0.77)
Location | 8,346,500 – 8,346,595 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 81.76 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -16.59 |
Energy contribution | -18.84 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.00 |
Mean z-score | -3.08 |
Structure conservation index | 0.52 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8346500 95 - 27905053 AGGAA------AUGGAAAGCAGUGGUGCACUGCUUGGCCAACGGAAGGAGCCAACCAAAGCGCUUAGUACAGCGGCAUGUGCACAUAUGAUGCAUGCCAUA .....------((((...(((...((((((((((((((...(....)..)))))......((((......))))))).))))))......)))...)))). ( -33.90) >DroSec_CAF1 8597 99 - 1 AGGAAAUGGAAAUGGAAAGCAGUGGUGCACUGCUUGGCCAACGGAAGGAA--GGCCAAAGAGCUUAGUACAGCGGCAUGUGCACAUAUGAUGCAUGCCAUA ...........((((...(((...(((((((((((((((..(....)...--)))))....(((......))))))).))))))......)))...)))). ( -35.50) >DroSim_CAF1 5540 99 - 1 AAGAAAUGGAAAUGGAAAGCAGUGGUGCACUGCUUGGCCAACGGAAGGAA--GGCCAAAGAGCUUAGUACAGCGGCAUGUGCACAUAUGAUGCAUGCCAUA ...........((((...(((...(((((((((((((((..(....)...--)))))....(((......))))))).))))))......)))...)))). ( -35.50) >DroEre_CAF1 9811 83 - 1 AAGAAAUGGAACUGGAAAACAGC------CAGCUUGGCCAGCGGAAGG------------AGCUUAGUCCAACGGACUCUGCACAUAUGAUGCAUGCCAUA (((...(((..(((.....))))------)).)))(((..(((..(.(------------.((..(((((...)))))..)).)...)..)))..)))... ( -21.60) >DroYak_CAF1 8491 99 - 1 AGGAAAUGGAAAUGGAAAGCAGUGGUGCACUGCUUGGCCCACGGAAGGAA--GGCCAAAGAGCUUAGUCUACCGGACUCGGCACAUAUGAUGAAUGCCAUA ...........((((.((((((((...))))))))((((..(....)...--)))).....(((.((((.....)))).)))..............)))). ( -31.70) >consensus AGGAAAUGGAAAUGGAAAGCAGUGGUGCACUGCUUGGCCAACGGAAGGAA__GGCCAAAGAGCUUAGUACAGCGGCAUGUGCACAUAUGAUGCAUGCCAUA ............(((.((((((((...))))))))..))).(....)..........................((((((((((....)).))))))))... (-16.59 = -18.84 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:14 2006