Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,345,304 – 8,345,417 |
Length | 113 |
Max. P | 0.921818 |
Location | 8,345,304 – 8,345,417 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 97.79 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -21.34 |
Energy contribution | -21.74 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8345304 113 - 27905053 UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAUGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA ..((((....(((((((.........)))))))................(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). ( -22.50) >DroSec_CAF1 7400 113 - 1 UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUGAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA ..((((....(((((((.........)))))))................(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). ( -22.50) >DroSim_CAF1 4335 110 - 1 UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAAC---AUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA ..((((....(((((((.........)))))))...---..........(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). ( -22.50) >DroEre_CAF1 8552 113 - 1 UCGGUCAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA ..((((....(((((((.........))))))).....)))).......(((((((((.....((((.((((..(....)....)))).)))).....))))).))))..... ( -21.30) >DroYak_CAF1 7245 113 - 1 UCGGUCAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA ..((((....(((((((.........))))))).....)))).......(((((((((.....((((.((((..(....)....)))).)))).....))))).))))..... ( -21.30) >consensus UCGGUUAAGAGCAUUUAUCCUUCAUUUAAAUGCAACAGGAUCUUUAAAAGGUUAAUAAAUCGAUUUCUGUGCAUGGCAACCUGAGUACCGAAACACAAUUAUUCAGCCAACCA ..((((....(((((((.........)))))))................(((((((((.....((((.((((..(....)....)))).)))).....))))).)))))))). (-21.34 = -21.74 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:11 2006