Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,337,775 – 8,337,870 |
Length | 95 |
Max. P | 0.996031 |
Location | 8,337,775 – 8,337,870 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -16.75 |
Energy contribution | -17.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -2.68 |
Structure conservation index | 0.67 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.996031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8337775 95 + 27905053 UAUGAUACUUAGAGCUAGAGGUAACAUUAUGGGAUUGCACUUUUUCCAUGAUUUAG---------------------GCUAGUUCUAUCUGUAACAACAUUAAAAAGUGUGUUUAA---- ..((.(((.(((((((((...(((.(((((((((.........)))))))))))).---------------------.)))))))))...))).))(((((....)))))......---- ( -24.00) >DroSec_CAF1 10497 91 + 1 ----AUACUUAGAGCUAGAGUUAAGAUUAUGGGAUUGCACUUUUUCCAUGAUUUAG---------------------GCUAGUUCUAUCUGUGACAACAUUAAAAAGUGUGUUUAA---- ----(((..(((((((((.....(((((((((((.........)))))))))))..---------------------.)))))))))..)))((((.((((....))))))))...---- ( -24.80) >DroSim_CAF1 9231 94 + 1 -AUGAUACUUAGAGCUAGAGUUAAGAUUAUGGGAUUGCACUUUUUCCAUGAUUUAC---------------------GCUAGUUCUAUCUGUGACAACAUUAAAAAGUGUGUUUAA---- -.((.(((.(((((((((.((..(((((((((((.........)))))))))))))---------------------.)))))))))...))).))(((((....)))))......---- ( -26.70) >DroYak_CAF1 9329 116 + 1 ----AUACUUAUAGCUAGAGGUAAGAUUAUGCGAUUGCACUUUUUCCAUGAUUUUGGGCUUUUGAACAAGUCAGUUAGUUAGCUUCAAGUAUGACAACAUUAAAAAGUGUUUUUAACUUA ----.(((((..((((((...((((((((((.((..........))))))))))))(((((......)))))......))))))..)))))(((.((((((....)))))).)))..... ( -24.50) >consensus ____AUACUUAGAGCUAGAGGUAAGAUUAUGGGAUUGCACUUUUUCCAUGAUUUAG_____________________GCUAGUUCUAUCUGUGACAACAUUAAAAAGUGUGUUUAA____ ....(((..(((((((((.....(((((((((((.........)))))))))))........................)))))))))..)))((((.((((....))))))))....... (-16.75 = -17.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:10 2006