Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,331,514 – 8,331,623 |
Length | 109 |
Max. P | 0.866870 |
Location | 8,331,514 – 8,331,623 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.27 |
Mean single sequence MFE | -22.37 |
Consensus MFE | -18.63 |
Energy contribution | -18.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.59 |
Structure conservation index | 0.83 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8331514 109 + 27905053 AUUCAAUUCAAACAAGCAAAGUGAACACGUCGCUAAGCGAAAGCUAAGCAAAUAAACAAGCGCAGCUGAACAAGCUAAACAAUCUGCAGUAAAGU-GCAAGUUAAAGUGA .........................(((...(((.(((....))).))).....(((..((((((((.....))))..((........))...))-))..)))...))). ( -23.50) >DroEre_CAF1 10616 107 + 1 UUUCAAUUCAAAGAAGCAAAGUGAACACAUCGCUGAGCGAAAGCUAAGCAACCAAAUAAGCGCAGCUGAACAAGCUAAACAAACUGCAGUGAAGU-GCAAGU-AAAGUA- ...............((..(((((.....))))).(((....)))..))..........((((((((.....))))......((....))...))-))....-......- ( -21.10) >DroYak_CAF1 6599 110 + 1 AUUCAAUUCAAACAAGCAAACUGAAAACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAUCUGCAGUAACGUUGCAAGUUAAAGUGA ..(((.....(((..((((((((........(((.(((....))).)))..............((((.....))))..........))))....))))..)))....))) ( -22.50) >consensus AUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAUCUGCAGUAAAGU_GCAAGUUAAAGUGA ...............(((...((........(((.(((....))).)))..............((((.....))))...))...)))....................... (-18.63 = -18.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:09 2006