Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,329,026 – 8,329,146 |
Length | 120 |
Max. P | 0.715845 |
Location | 8,329,026 – 8,329,146 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -46.50 |
Consensus MFE | -44.95 |
Energy contribution | -45.07 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.02 |
Mean z-score | -1.67 |
Structure conservation index | 0.97 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8329026 120 + 27905053 AUCUCAAGGAUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCUCUGUUCGAGGUGCGCUCCACAGCCGGAGACACAC ...((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((..((((......)))).))).. ( -47.30) >DroSec_CAF1 7585 120 + 1 AUCUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGUACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACAC ...((.(((((((((((...))))))))))).))(((((((((.(((.(((((((((((........)).))))))..))).))).)))))))))(((..((((......)))).))).. ( -47.30) >DroEre_CAF1 7790 120 + 1 ACCUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAAGUGCGCUCCACCGCCGGAGACACGC ...((.(((((((((((...))))))))))).))(((.(((((.((..(((((((((((........)).))))))..)))...((((......))))....)).))))).)))...... ( -44.90) >consensus AUCUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACAC ...((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((..((((......)))).))).. (-44.95 = -45.07 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:08 2006