Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,328,088 – 8,328,322 |
Length | 234 |
Max. P | 0.995942 |
Location | 8,328,088 – 8,328,206 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.81 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -18.87 |
Energy contribution | -21.83 |
Covariance contribution | 2.96 |
Combinations/Pair | 1.22 |
Mean z-score | -1.93 |
Structure conservation index | 0.48 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8328088 118 - 27905053 UAUUUAUACUCCG-GCGCUCUUUUCGCGAACAUUCGAGGCGCGCUCUCUCGAACCAACGAGAGCAGUAUGUCGUUUACUGUGUGACAGAGUGAGAGAGCAUUAGUG-CAGAGAGGGAGAG ........((((.-.(((.......)))....(((...(((((((((((((......((...((((((.......)))))).))......)))))))))....)))-)...))))))).. ( -37.50) >DroSec_CAF1 6443 118 - 1 UAUUUAUACUCCG-GCGCUCUUUUCGCGAACAUUCGAGGCGCGCUCUCUCGAAGCAACGAGAACAGUCUUUCGUUUACUGUGUGACAGAGUGAGGGAGCUUUAGUG-CAGAGAGGGAGAG ........((((.-.(((.......)))....(((...(((((((((((((....(((((((......)))))))..(((.....)))..)))))))))....)))-)...))))))).. ( -36.80) >DroSim_CAF1 6524 119 - 1 UAUUUAUACUCCGGGCGCUCUUUUCGCGAACAUUCGAGGCGCGCUCUCUCGAAGCAACGAGAACAGUAUGCCGUUUACUGUGUGUCAGAGUGAGAGAGCAUUAGUG-CAGAGAGGGAGAG ........(((((..(((.......)))..).(((...(((((((((((((.....(((...((((((.......)))))).))).....)))))))))....)))-)...))))))).. ( -41.50) >DroEre_CAF1 6868 120 - 1 UAUUUAUACACCCGGCGCUCCUUUCGAGAACAUUCGAAGCGUGCUCUCUCGAAGCAACGAGAACAGUAUGCUGUUUAGUAUGUGCCAGAAUGAGAUAGCAAUAAUGUCUGGGAAGGUGAG ...((((...((((((((.....(((((....)))))((((((((.(((((......)))))..)))))))).........)))))......(((((.......))))))))...)))). ( -36.40) >DroAna_CAF1 3986 107 - 1 UAUUUAUACUCGG-CUGCUCGGGCGGGGAAAAUUCGAGAUUUCCCUUCUCGAAGUCUC---------ACGACGUUUCCUAUGAGAGCGAGUGAGACAGCAGCGGAG-AAAAAUGGAAA-- ........(((.(-(((((((((.(((((((........))))))).))))).(((((---------((..(((((.......))))).))))))).))))).)))-...........-- ( -45.80) >consensus UAUUUAUACUCCG_GCGCUCUUUUCGCGAACAUUCGAGGCGCGCUCUCUCGAAGCAACGAGAACAGUAUGCCGUUUACUGUGUGACAGAGUGAGAGAGCAUUAGUG_CAGAGAGGGAGAG ........((((..(((((....(((........))))))))(((((((((...........((((((.......)))))).........)))))))))...............)))).. (-18.87 = -21.83 + 2.96)
Location | 8,328,206 – 8,328,322 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.44 |
Mean single sequence MFE | -25.74 |
Consensus MFE | -12.55 |
Energy contribution | -14.14 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.19 |
Mean z-score | -2.43 |
Structure conservation index | 0.49 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8328206 116 + 27905053 GAGGCGCUUCGUCUACGGAGCGACAAUUCAAUUCAAACAAGCAAAGUGAACACGUCGCUAAGCGAAAGCUAAGCAAAUAAACAAGCGCAGCUGAACAAGCUAAA----CAAUCUGCAGUA (((.(((((((....)))))))....)))...........(((...((........(((.(((....))).)))..............((((.....))))...----))...))).... ( -31.30) >DroSec_CAF1 6561 120 + 1 GAGCCGCUUCGUUCCCAGAGCGUCAAUUCAAUUCAAACAAGCAAAGUGAAAACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAACAAUCUGCAUUA ((((......)))).((((((((......................((....))...(((.(((....))).)))..........))))((((.....))))..........))))..... ( -26.80) >DroSim_CAF1 6643 104 + 1 GAGCCGCUUCGUUCCCAGAGCGUCAAUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAA---------------- ..((.(((((((((...)))))..................((..(((((.....))))).(((....)))..))........))))))((((.....))))...---------------- ( -24.20) >DroEre_CAF1 6988 116 + 1 GCGCUGCUUGUUUCUUUUAGCGUCAUUUCAAUUCAAAGAAGCAAAGUGAACACAUCGCUCAGCGAAAGUUAAGCAACCAAAUAAGCGCAGCUGAACAAGCUAAA----CAAACUGCAGUG .((((((((((((......(((((((((...(((...)))...)))))).......(((.(((....))).)))...........)))((((.....)))))))----)))...)))))) ( -29.70) >DroAna_CAF1 4093 93 + 1 GCGGCGGAAAUUUCCCAG----CCAGCACAUUUGA-------AAAGUGAAAAG-----CAAGUGAAAAGUUUG-----AAAGAAAGACAGCUGAAAAAGCUAAA------AUCUGAAAGG ((((((((....)))..)----)).)).((((((.-------...........-----))))))....((((.-----......))))((((.....))))...------.......... ( -16.70) >consensus GAGCCGCUUCGUUCCCAGAGCGUCAAUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAA____CAAUCUGCAGUA ..(.(((((........))))).)................................(((.(((....))).)))..............((((.....))))................... (-12.55 = -14.14 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:07 2006