Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,292,850 – 8,292,970 |
Length | 120 |
Max. P | 0.786672 |
Location | 8,292,850 – 8,292,970 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -42.44 |
Consensus MFE | -36.86 |
Energy contribution | -36.03 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.31 |
Mean z-score | -1.68 |
Structure conservation index | 0.87 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8292850 120 - 27905053 UAUAAGGGUGAGUCCAAGAGAUUUGCUCCCGAGGAGAUCAGUUCGAUGGUGCUGACCAAGAUGAAGGAGACGGCGGAGGCGUAUCUGGGCGAGAGCAUCACGGAUGCAGUCAUCACAGUU ......(((.((((((.(((.....((((...)))).....)))..))).))).)))..(((((.(....).((....))(((((((.((....))....)))))))..)))))...... ( -39.20) >DroSec_CAF1 4403 120 - 1 UAUAAGGGUGAGUCCAAGCGAUUUGCCCCCGAGGAGAUCAGCUCAAUGGUGCUGGCCAAGAUGAAAGAGACGGCGGAGGCGUAUCUGGGCGAGAGCAUCACGGAUGCAGUCAUCACAGUU .....(((..((((.....))))..)))(((..(((.....)))..))).(((((((..............)))(..((((((((((.((....))....))))))).)))..).)))). ( -39.24) >DroSim_CAF1 4474 120 - 1 UAUAAGGGUGAGUCCAAGCGAUUUGCCCCCGAGGAGAUCAGCUCAAUGGUGCUGGCUAAGAUGAAGGAGACGGCGGAGGCGUAUCUGGGCGAGAGCAUCACGGAUGCAGUCAUCACAGUU .....(((..((((.....))))..)))......((.(((((........)))))))..(((((.(....).((....))(((((((.((....))....)))))))..)))))...... ( -39.70) >DroEre_CAF1 4480 120 - 1 UAUAAGGGCGAGUCCAAGAGAUUCGCCCCCGAGGAGAUCAGCUCAAUGGUGCUGGCCAAGAUGAAGGAGACGGCGGAGGCGUAUCUGGGCGAGAGCAUCACAGAUGCAGUCAUCACAGUU .....(((((((((.....)))))))))(((..(((.....)))..))).(((((((....((..(....)..))..)))(((((((.((....))....)))))))........)))). ( -45.70) >DroYak_CAF1 4416 120 - 1 UAUAAGGGCGAGUCGAAGAGAUUUGCCCCCGAGGAGAUCAGCUCAAUGGUGCUGGCCAAGAUGAAGGAGACGGCGGAAGCGUAUCUGGGCGAGAGCAUCACAGAUGCAGUCAUCACAGUU .....(((((((((.....))))))))).......(..((((........))))..)..(((((.(....).((....))(((((((.((....))....)))))))..)))))...... ( -48.10) >DroPer_CAF1 4877 120 - 1 UUCAAGGGCGAAGCGAAGCGCUUUUCCCCGGAGGAGAUCAGCUCGAUGGUGCUGGUCAAAAUGAAGGAGACGGCCGAGGCUUAUCUGGGCCAGACCAUCACAGACGCAGUCAUCACAGUG (((..(((.((((((...)))))).)))..)))..(((..(((((...(((.(((((........(....)((((.(((....))).)))).))))).)))...)).))).)))...... ( -42.70) >consensus UAUAAGGGCGAGUCCAAGAGAUUUGCCCCCGAGGAGAUCAGCUCAAUGGUGCUGGCCAAGAUGAAGGAGACGGCGGAGGCGUAUCUGGGCGAGAGCAUCACAGAUGCAGUCAUCACAGUU .....(((((((((.....)))))))))....((...(((((........)))))))..(((((........((....))(((((((.((....))....)))))))..)))))...... (-36.86 = -36.03 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:02 2006