Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,291,351 – 8,291,451 |
Length | 100 |
Max. P | 0.724327 |
Location | 8,291,351 – 8,291,451 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.75 |
Mean single sequence MFE | -38.02 |
Consensus MFE | -23.63 |
Energy contribution | -26.30 |
Covariance contribution | 2.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 0.62 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8291351 100 + 27905053 --------------CUUUAGUCGACCUCCUCGACUGUGGGUCCAGAGUAGCCGCCAAAUCCUCCGGCCUGUUGGCCACAGUUGGCUCCCGGACCCCCAGCUGCUCCC------GCUCCCU --------------...(((((((.....))))))).(((..(.(((((((.(((((.......((((....))))....)))))....((....)).)))))))..------)..))). ( -38.30) >DroSec_CAF1 2968 106 + 1 --------------CUUUAGUCGACCUCCUCCACUGUGGGUCCAGAGUAGCCGCCAAAUCCUCCGGCCUGUUGGCCGCAGUUGGCUCCCGGUCCACCAGCUGCUCCCGCUCCCGCUCCCU --------------....(((.((.....)).)))(((((..(.(((((((.(((((...((.(((((....))))).)))))))....((....)).)))))))..)..)))))..... ( -39.20) >DroSim_CAF1 2969 106 + 1 --------------CUUUAGUCGACCUCCUCCACUGUGGGUCCAGAGUAGCCGCCAAAUCCUCCGGCCUGUUGGCCGCAGUUGGCUCCCGGUCCACCAGCUGCUCCCGCUCCCGCUCCCU --------------....(((.((.....)).)))(((((..(.(((((((.(((((...((.(((((....))))).)))))))....((....)).)))))))..)..)))))..... ( -39.20) >DroEre_CAF1 2975 106 + 1 --------------CUUUAGUCGACCUCCUCGACAGUGGGUCCAGAGUAGCCGCCAAAUCCUCCAGCCUGUUGGCCGCAGUUGGCUCCCGGACUACCAGCUGCUCCUGCGCCCGCUGCCU --------------.....(((((.....)))))(((((((.(((((((((.(((((...((.(.(((....))).).)))))))....((....)).)))))).))).))))))).... ( -42.70) >DroYak_CAF1 3031 106 + 1 --------------CUUUAGUCAACCUCCUCGACUGUUGGCCCAGAGUAGCCCCCAAAUCCUCCUGCCUGCUGACCGCAGUUGGCUCCCGGGCCACCAGCUGCUCCUGCUCCCGCUGCCU --------------...(((((.........))))).((((((.(((.............)))..(((.((((....)))).)))....)))))).((((.((....))....))))... ( -30.52) >DroPer_CAF1 3364 114 + 1 UCCUUACAAGCGUCCCUUAGUCGACCUCCUCGACAGUGGGUCCAGAAAAGCCUCCAAAUCCGCCGGCCUGCUGGCCACAGUUGGCUCCUGCC------GCAGGACCUGCCGCAGCGCCCU .........((((..(...(((((.....))))).(..(((((.((......)).......((.((((....))))......(((....)))------)).)))))..).)..))))... ( -38.20) >consensus ______________CUUUAGUCGACCUCCUCGACUGUGGGUCCAGAGUAGCCGCCAAAUCCUCCGGCCUGUUGGCCGCAGUUGGCUCCCGGACCACCAGCUGCUCCCGCUCCCGCUCCCU ......................((((..(......)..))))..(((((((.(((((...((.(((((....))))).)))))))....((....)).)))))))............... (-23.63 = -26.30 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:01 2006