Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,215,965 – 1,216,116 |
Length | 151 |
Max. P | 0.997074 |
Location | 1,215,965 – 1,216,076 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -38.00 |
Consensus MFE | -35.39 |
Energy contribution | -35.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -0.25 |
Structure conservation index | 0.93 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1215965 111 - 27905053 UCCGGCCAUCGGCAAUCAGCAAUCAGCAACUAGCAACCAGCGAUCGGCGAUCGGCAAUAGCA-------GUAGGCAGCUGGUUGGCGUGGCCGCUUCGGUUGCCGCGUUCCCGUUUUG ..((((((.((.((((((((.....((.....))..((..(((((...)))))((....)).-------...))..)))))))).))))))))...(((..((...))..)))..... ( -39.90) >DroSec_CAF1 6873 97 - 1 UCCGGCAAUC---------------------AGCAACCAGUGAUCGGCGAUCGGCAAUAGCAGUAGGCAGUAGGCAGCUGGUUGGCGUGGCCGCUUCGGUUGCCGCGUUCCCGUUUUG ..((((((((---------------------(((..((.((((((...)))).))....((.....))....))..))))))))(((((((.((....)).)))))))..)))..... ( -36.60) >DroSim_CAF1 6994 97 - 1 UCCGGCAAUC---------------------AGCAACCAGUGAUCGGCGAUCGGCAAUAGCAGCAGGCAGUAGGCAGCUGGUUGGCGUGGCCGCUUCGGUUGCCGCGUUCCCGUUUUG ..((((((((---------------------(((..(((.((.((.((.....((....)).)).)))).).))..))))))))(((((((.((....)).)))))))..)))..... ( -37.50) >consensus UCCGGCAAUC_____________________AGCAACCAGUGAUCGGCGAUCGGCAAUAGCAG_AGGCAGUAGGCAGCUGGUUGGCGUGGCCGCUUCGGUUGCCGCGUUCCCGUUUUG ..(((............................((((((((((((...)))).((....))...............))))))))(((((((.((....)).)))))))..)))..... (-35.39 = -35.17 + -0.22)
Location | 1,216,003 – 1,216,116 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.42 |
Mean single sequence MFE | -40.15 |
Consensus MFE | -31.71 |
Energy contribution | -31.49 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.94 |
Structure conservation index | 0.79 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1216003 113 + 27905053 CAGCUGCCUAC-------UGCUAUUGCCGAUCGCCGAUCGCUGGUUGCUAGUUGCUGAUUGCUGAUUGCCGAUGGCCGGACAACCAGUUUUCGGCGGACAACAGGAAAGCCAGCGAACUG ..((((.((.(-------.((....)).).(((((((..(((((((((..(((..((...((.....))))..)))..).))))))))..)))))))..........)).))))...... ( -38.60) >DroSec_CAF1 6911 99 + 1 CAGCUGCCUACUGCCUACUGCUAUUGCCGAUCGCCGAUCACUGGUUGCU---------------------GAUUGCCGGACAACCAGUUUUCGGCGGACAACAGGAAAGCCAGCGAGCUG (((((((......(((.(.((....)).).(((((((..((((((((((---------------------(.....))).))))))))..))))))).....))).......)).))))) ( -39.72) >DroSim_CAF1 7032 99 + 1 CAGCUGCCUACUGCCUGCUGCUAUUGCCGAUCGCCGAUCACUGGUUGCU---------------------GAUUGCCGGACAACCAGUUUUCGGCGGACAACAGGAAAGCCAGCGAGCUG (((((((......((((..((....)).(.(((((((..((((((((((---------------------(.....))).))))))))..))))))).)..)))).......)).))))) ( -42.12) >consensus CAGCUGCCUACUGCCU_CUGCUAUUGCCGAUCGCCGAUCACUGGUUGCU_____________________GAUUGCCGGACAACCAGUUUUCGGCGGACAACAGGAAAGCCAGCGAGCUG ..((((.((..........((....)).(.(((((((..((((((((((............................)).))))))))..))))))).)........)).))))...... (-31.71 = -31.49 + -0.22)
Location | 1,216,003 – 1,216,116 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.42 |
Mean single sequence MFE | -45.70 |
Consensus MFE | -38.40 |
Energy contribution | -39.85 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.03 |
Mean z-score | -3.36 |
Structure conservation index | 0.84 |
SVM decision value | 2.79 |
SVM RNA-class probability | 0.997074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1216003 113 - 27905053 CAGUUCGCUGGCUUUCCUGUUGUCCGCCGAAAACUGGUUGUCCGGCCAUCGGCAAUCAGCAAUCAGCAACUAGCAACCAGCGAUCGGCGAUCGGCAAUAGCA-------GUAGGCAGCUG ......((((.((...((((((((((((((...((((((((..((((...))).....((.....))..)..))))))))...))))))...))))))))..-------..)).)))).. ( -44.80) >DroSec_CAF1 6911 99 - 1 CAGCUCGCUGGCUUUCCUGUUGUCCGCCGAAAACUGGUUGUCCGGCAAUC---------------------AGCAACCAGUGAUCGGCGAUCGGCAAUAGCAGUAGGCAGUAGGCAGCUG (((((.(((.((((..((((((((((((((..(((((((((.........---------------------.)))))))))..))))))...))))))))....))))....)))))))) ( -46.40) >DroSim_CAF1 7032 99 - 1 CAGCUCGCUGGCUUUCCUGUUGUCCGCCGAAAACUGGUUGUCCGGCAAUC---------------------AGCAACCAGUGAUCGGCGAUCGGCAAUAGCAGCAGGCAGUAGGCAGCUG ..(((..(((.((((.((((((((((((((..(((((((((.........---------------------.)))))))))..))))))...)))))))).)).)).)))..)))..... ( -45.90) >consensus CAGCUCGCUGGCUUUCCUGUUGUCCGCCGAAAACUGGUUGUCCGGCAAUC_____________________AGCAACCAGUGAUCGGCGAUCGGCAAUAGCAG_AGGCAGUAGGCAGCUG (((((.(((.((((..((((((((((((((..(((((((((...............................)))))))))..))))))...))))))))....))))....)))))))) (-38.40 = -39.85 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:12 2006