Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,287,184 – 8,287,297 |
Length | 113 |
Max. P | 0.596759 |
Location | 8,287,184 – 8,287,297 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.70 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -16.04 |
Energy contribution | -15.10 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.33 |
Mean z-score | -1.48 |
Structure conservation index | 0.78 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8287184 113 - 27905053 UGUAUUCAUUCGUUUU--UGCCAUUUA----UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUGAGAUCCAGGUUAUUCGAUUUUCUUUCAAUAGCCUGUUUAAUUUCAA ................--.(((.....----.............)))....(((((......)))))....((((((.(((((((((.((.......)))))))))))....)))))). ( -21.17) >DroSec_CAF1 4855 115 - 1 UGUAUUCAUCCGUUUUUUUUUCAAUUA----UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUAAGAUCCAGGUUAUUCGAUUUCCUUUCAAUAGCCUGUUUAAUUUCCA ...........................----.............((((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........)). ( -18.60) >DroSim_CAF1 5200 111 - 1 --UUUUCAUCCGUUUU--UUUCAGUUA----UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUAAGAUCCAGGUUAUUCGAUUUCCUUUCAAUAGCCUGUUUAAUUUCCA --..............--.........----.............((((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........)). ( -18.60) >DroEre_CAF1 4852 113 - 1 UGUAUUAAUUCGAGUU--UACCAGUUA----UACUCACUUAAUAAGCUUAUGUACUGGUCCAAGUACUUCAUGAGAUCCAGGUUAUUAGAUUUUCUUUCAAUAGCCUGUUUAAUUUCCA ..((((((...((((.--((.....))----.))))..))))))..((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........... ( -21.70) >DroYak_CAF1 4874 113 - 1 UCUAAUCAUCCGUGUU--UUCCUGUUA----UACUCACUCAACAAGCUUAUGUACUGGUCCAGGUACUUCAUGAGAUCUAGGUUAUUUGAUUUUCUUUCUAUAGCCUGUUUAAUUUCCA .......(((((((..--..((((...----.((.((....(((......)))..)))).)))).....)))).))).((((((((..((.......)).))))))))........... ( -16.10) >DroAna_CAF1 4613 112 - 1 ---AAUGAAAA--GUG--UUCAAGUUAGGGCCAUUUACUUAUUAGGCUUAUGUACUGAUCCAGGUACUUCAUGAGGUCCAGGUUAUUGGAUUUCUUUUCGAUGGUUUGCUUGAUUUCCA ---........--...--.((((((..((((((((((((((((((((....)).)))))..)))))......(((((((((....))))))))).....))))))))))))))...... ( -27.60) >consensus UGUAUUCAUCCGUGUU__UUCCAGUUA____UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUGAGAUCCAGGUUAUUCGAUUUCCUUUCAAUAGCCUGUUUAAUUUCCA ..............................................((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........... (-16.04 = -15.10 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:00 2006